SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19830 | AT | Annotation by Michelle Graham. TAIR10: SNF7 family protein | chr2:8558101-8559389 REVERSE LENGTH=213 | SoyBase | E_val: 2.00E-109 | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0000815 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ESCRT III complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1656 | KOG | Protein involved in glucose derepression and pre-vacuolar endosome protein sorting | JGI | ISS | |
| PTHR22761 | Panther | SNF7 - RELATED | JGI | ISS | |
| PF03357 | PFAM | Snf7 | JGI | ISS | |
| UniRef100_B9RKD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Charged multivesicular body protein 4b, putative n=1 Tax=Ricinus communis RepID=B9RKD5_RICCO | SoyBase | E_val: 5.00E-109 | ISS |
| UniRef100_I1K620 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K620_SOYBN | SoyBase | E_val: 3.00E-153 | ISS |
|
Glyma05g36130 not represented in the dataset |
Glyma05g36130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g03510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g224200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g36130.2 sequence type=transcript gene model=Glyma05g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCCATCACAGTTCACGGGAGATCGATTGATACCGTCCCGTTGATTTTCCAATTCGACGAATAAGGGTATCACATCTCTTAATCAACCATGTTTACCCGAATTTTTGGTAAACCTAAACCGGAAGTCAATACTCTAACCGCTTTAGACGAGTTAAATGACAAACTTGAAATGTTAGAGAAAAAGGAGAAAGTACTCCTAAAAAAGGCTGCAGCAGAAGTTGAAAAAGCCAAAGAATTCACTAGGGCAAAGAATAAAAGGGCGGCAATACAATGTTTGAAGAGGAAGAGGCTATATGAACAGCAAATAGAGCAACTTGGCAATTTCCAGTTGCGTATTCATGACCAGATGATAATGTTGGAAGGTGCCAAGGCTACCACTGAAACTGTTGATGCATTGAGAACTGGAGCCGCTGCTATGAGGGCTATGCAAAAAGAAACGAATATTGATGATGTTGACAAGACTATGGACGAGATCAACGAACAGACAGAGAACATGAAACAAATTCAGGAAGCATTGTCTACTCCAATCGGAGCAGCTGCTGACTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTAGAGGGTGCTGAATTGGAAGAACAGCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCATGTTCCAGCTGGGTGGCAACCCACTCGCCCTGTGTCTTCGAAGCCCACTGCCGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGAGCAAGTCCCTTTTCTCAGATGCGACACTATTGATTTATGCTATCTATTCATTAATCTGTTCTAGTTTGTTGGTATTGCAATTAAGGTGGCAGTTGAGTGAATTTGTGTGTGCACCAGTTTCATGTTAAATATCAACCTTTGCACAGTTGAGTTCACTTGTATAATAATAGTTTGGAATGAATTCCCTAAAGTTGCTTGTCAGGAAAAGTTTGACGATCTTATTTTATGCAGTTTTTATTGATTTTGCAGCTGGCTTTGATTAGGCCAGAACTTTACAGGCATTGATGTTCATTATAAGTGGCCTCTTTTAAAATCAAAGAGTGACACAGAGAATTCTGCCC
>Glyma05g36130.1 sequence type=CDS gene model=Glyma05g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTACCCGAATTTTTGGTAAACCTAAACCGGAAGTCAATACTCTAACCGCTTTAGACGAGTTAAATGACAAACTTGAAATGTTAGAGAAAAAGGAGAAAGTACTCCTAAAAAAGGCTGCAGCAGAAGTTGAAAAAGCCAAAGAATTCACTAGGGCAAAGAATAAAAGGGCGGCAATACAATGTTTGAAGAGGAAGAGGCTATATGAACAGCAAATAGAGCAACTTGGCAATTTCCAGTTGCGTATTCATGACCAGATGATAATGTTGGAAGGTGCCAAGGCTACCACTGAAACTGTTGATGCATTGAGAACTGGAGCCGCTGCTATGAGGGCTATGCAAAAAGAAACGAATATTGATGATGTTGACAAGACTATGGACGAGATCAACGAACAGACAGAGAACATGAAACAAATTCAGGAAGCATTGTCTACTCCAATCGGAGCAGCTGCTGACTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTAGAGGGTGCTGAATTGGAAGAACAGCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCATGTTCCAGCTGGGTGGCAACCCACTCGCCCTGTGTCTTCGAAGCCCACTGCCGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGA >Glyma05g36130.2 sequence type=CDS gene model=Glyma05g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTACCCGAATTTTTGGTAAACCTAAACCGGAAGTCAATACTCTAACCGCTTTAGACGAGTTAAATGACAAACTTGAAATGTTAGAGAAAAAGGAGAAAGTACTCCTAAAAAAGGCTGCAGCAGAAGTTGAAAAAGCCAAAGAATTCACTAGGGCAAAGAATAAAAGGGCGGCAATACAATGTTTGAAGAGGAAGAGGCTATATGAACAGCAAATAGAGCAACTTGGCAATTTCCAGTTGCGTATTCATGACCAGATGATAATGTTGGAAGGTGCCAAGGCTACCACTGAAACTGTTGATGCATTGAGAACTGGAGCCGCTGCTATGAGGGCTATGCAAAAAGAAACGAATATTGATGATGTTGACAAGACTATGGACGAGATCAACGAACAGACAGAGAACATGAAACAAATTCAGGAAGCATTGTCTACTCCAATCGGAGCAGCTGCTGACTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTAGAGGGTGCTGAATTGGAAGAACAGCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCATGTTCCAGCTGGGTGGCAACCCACTCGCCCTGTGTCTTCGAAGCCCACTGCCGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGA
>Glyma05g36130.1 sequence type=predicted peptide gene model=Glyma05g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTRIFGKPKPEVNTLTALDELNDKLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMRAMQKETNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVHVPAGWQPTRPVSSKPTAEEDELAALQAEMAL* >Glyma05g36130.2 sequence type=predicted peptide gene model=Glyma05g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTRIFGKPKPEVNTLTALDELNDKLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMRAMQKETNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVHVPAGWQPTRPVSSKPTAEEDELAALQAEMAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
