Glyma05g36050 - SoyBase

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Report for Sequence Feature Glyma05g36050

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39969404
stop:	39974014
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g36050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26270	AT	Annotation by Michelle Graham. TAIR10: phosphofructokinase 3 \| chr4:13301094-13304030 REVERSE LENGTH=489	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0010053	GO-bp	Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005945	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 6-phosphofructokinase complex	SoyBase	N/A	ISS
GO:0003872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructokinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2440	KOG	Pyrophosphate-dependent phosphofructo-1-kinase	JGI		ISS
PTHR13697	Panther	PHOSPHOFRUCTOKINASE	JGI		ISS
PF00365	PFAM	Phosphofructokinase	JGI		ISS
UniRef100_G7L7C4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphofructokinase n=2 Tax=Medicago truncatula RepID=G7L7C4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KPV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPV0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g36050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g36050 not represented in the dataset	Glyma05g36050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g36050

Paralog	Evidence	Comments
Glyma08g03570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g36050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g224900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g36050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g36050

Limit To All Plant Sequences

>Glyma05g36050.3   sequence type=transcript   gene model=Glyma05g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGAGAACCTCGATTTGGGCACTCTCTATGTTTCCTATTTATATTTGATTAATATCACTGGTTCATTTTACAATGGTGAAGCACCTTTACTATAAATATAAGACCCTTCTCTGATCCACTCGTTACACCCTTCAACGTATCCTTTTCTTCCCTCAATTACAATTCACAAACACAATTAATCACATACAATACAGCATTTTCTCTCTTTACGCACACAGTGTTTGTGTTACGTTAGAATGGGTTCGTCGCCGAATTCAAAGCCTAAGATCATTAGAGGCACCGCAGGTTATGTGTTGGAGGATGTTCCACATATGGCTGATTACATTCCTGATCTTCCAACATATTCTAATCCTTTGCAGAACAATCCTGCTTACTCAGTTGTCAAGCAGTATTTCGTGCACATCGATGACAGTGTTCCGCAGAAGATAATTGCTAATAAAGATAGTCCAAGAGGGGTACATTTTCGACGTGCCGGACCTCGTCAAAGGGTGTATTTCGAATCAGATGATGTTCAGGCTGCAATTGTGACATGTGGTGGTCTATGCCCTGGTCTCAACACCGTCATTAGGGAACTTGTATGTGCGCTATATCACATGTATGGCGTCAAGAAAATTTTGGGAATCAATGGAGGATACAAGGGTTTTTATGCTCACAATACAATCACTCTAACTCCTAAAAGCGTGAATGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGGTTTATATAATTGGAGGAGATGGAACTCAGAGGGGTGCAGATAGGATTTTTGAGGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCGGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGGGTTTATTGCAATGTATGCTACTCTGGCCAGTAGGGATGTGGACTGTTGCTTAATTCCAGAGTCACCCTTTCACCTTGAGGGTCCAGGTGGACTTTTTGAGTTTACAGAGAAAAGGCTAAAGGAAAACGGCCACATGGTTATTGTGATTGCTGAAGGGGCAGGACAGGAACTTGTTTCTGAGAGCATCCAATCCTTGCACAAGCAGGATGCTTCTGGAAACAAACTTCTTCAAGATGTTGGGCTATGGATATCCCAAAAGATAAAGGATCATTTTACAAAACAGAAGACAATGACCATAAATCTCAAATATATAGATCCAACGTATATGATCCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCGATGGCAGGTTACACTGGATTTACAAGTGGGCTTGTCAATGGAAGACAAACTTACATACCATTTTATAGGATCACTGAGGGACAGAACAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACGATTGCTAAGACTGTCTCTGAAGAAAAGAGGGAAGAAGAAGCAAACGGCCATGAGTAAGGGTATTGTTCAAATAACCATTTGGCTTAGAAAAAAGTCGGCAGCATTTTTCACCCTGCTATATATGTACATGTTATTGTATTCATTTTATCTTATTATATCTTGCACTGTAAGTAATATATATATATATATATATATATATAATATGTTTGAGTTATTTTTTTGTCCTTCCAAGTCCAAAAGATGGCTGTGAAGAGCTCAGCATTACACGAGGAA

Coding sequences of Glyma05g36050

Limit To All Plant Sequences

>Glyma05g36050.2   sequence type=CDS   gene model=Glyma05g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCGTCGCCGAATTCAAAGCCTAAGATCATTAGAGGCACCGCAGGTTATGTGTTGGAGGATGTTCCACATATGGCTGATTACATTCCTGATCTTCCAACATATTCTAATCCTTTGCAGAACAATCCTGCTTACTCAGTTGTCAAGCAGTATTTCGTGCACATCGATGACAGTGTTCCGCAGAAGATAATTGCTAATAAAGATAGTCCAAGAGGGGTACATTTTCGACGTGCCGGACCTCGTCAAAGGGTGTATTTCGAATCAGATGATGTTCAGGCTGCAATTGTGACATGTGGTGGTCTATGCCCTGGTCTCAACACCGTCATTAGGGAACTTGTATGTGCGCTATATCACATGTATGGCGTCAAGAAAATTTTGGGAATCAATGGAGGATACAAGGGTTTTTATGCTCACAATACAATCACTCTAACTCCTAAAAGCGTGAATGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGGTTTATATAATTGGAGGAGATGGAACTCAGAGGGGTGCAGATAGGATTTTTGAGGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCGGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGGGTTTATTGCAATGTATGCTACTCTGGCCAGTAGGGATGTGGACTGTTGCTTAATTCCAGAGTCACCCTTTCACCTTGAGGGTCCAGGTGGACTTTTTGAGTTTACAGAGAAAAGGCTAAAGGAAAACGGCCACATGGTTATTGTGATTGCTGAAGGGGCAGGACAGGAACTTGTTTCTGAGAGCATCCAATCCTTGCACAAGCAGGATGCTTCTGGAAACAAACTTCTTCAAGATGTTGGGCTATGGATATCCCAAAAGATAAAGGATCATTTTACAAAACAGAAGACAATGACCATAAATCTCAAATATATAGATCCAACGTATATGATCCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCGATGGCAGGTTACACTGGATTTACAAGTGGGCTTGTCAATGGAAGACAAACTTACATACCATTTTATAGGATCACTGAGGGACAGAACAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACGATTGCTAAGACTGTCTCTGAAGAAAAGAGGGAAGAAGAAGCAAACGGCCATGAGTAA

>Glyma05g36050.3   sequence type=CDS   gene model=Glyma05g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCGTCGCCGAATTCAAAGCCTAAGATCATTAGAGGCACCGCAGGTTATGTGTTGGAGGATGTTCCACATATGGCTGATTACATTCCTGATCTTCCAACATATTCTAATCCTTTGCAGAACAATCCTGCTTACTCAGTTGTCAAGCAGTATTTCGTGCACATCGATGACAGTGTTCCGCAGAAGATAATTGCTAATAAAGATAGTCCAAGAGGGGTACATTTTCGACGTGCCGGACCTCGTCAAAGGGTGTATTTCGAATCAGATGATGTTCAGGCTGCAATTGTGACATGTGGTGGTCTATGCCCTGGTCTCAACACCGTCATTAGGGAACTTGTATGTGCGCTATATCACATGTATGGCGTCAAGAAAATTTTGGGAATCAATGGAGGATACAAGGGTTTTTATGCTCACAATACAATCACTCTAACTCCTAAAAGCGTGAATGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGGTTTATATAATTGGAGGAGATGGAACTCAGAGGGGTGCAGATAGGATTTTTGAGGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCGGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGGGTTTATTGCAATGTATGCTACTCTGGCCAGTAGGGATGTGGACTGTTGCTTAATTCCAGAGTCACCCTTTCACCTTGAGGGTCCAGGTGGACTTTTTGAGTTTACAGAGAAAAGGCTAAAGGAAAACGGCCACATGGTTATTGTGATTGCTGAAGGGGCAGGACAGGAACTTGTTTCTGAGAGCATCCAATCCTTGCACAAGCAGGATGCTTCTGGAAACAAACTTCTTCAAGATGTTGGGCTATGGATATCCCAAAAGATAAAGGATCATTTTACAAAACAGAAGACAATGACCATAAATCTCAAATATATAGATCCAACGTATATGATCCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCGATGGCAGGTTACACTGGATTTACAAGTGGGCTTGTCAATGGAAGACAAACTTACATACCATTTTATAGGATCACTGAGGGACAGAACAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACGATTGCTAAGACTGTCTCTGAAGAAAAGAGGGAAGAAGAAGCAAACGGCCATGAGTAA

Predicted protein sequences of Glyma05g36050

Limit To All Plant Sequences

>Glyma05g36050.2   sequence type=predicted peptide   gene model=Glyma05g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSPNSKPKIIRGTAGYVLEDVPHMADYIPDLPTYSNPLQNNPAYSVVKQYFVHIDDSVPQKIIANKDSPRGVHFRRAGPRQRVYFESDDVQAAIVTCGGLCPGLNTVIRELVCALYHMYGVKKILGINGGYKGFYAHNTITLTPKSVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQRGADRIFEEIRRRRLKVAVVGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESGENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFHLEGPGGLFEFTEKRLKENGHMVIVIAEGAGQELVSESIQSLHKQDASGNKLLQDVGLWISQKIKDHFTKQKTMTINLKYIDPTYMIRAVPSNASDNVYCTLLAQSAVHGAMAGYTGFTSGLVNGRQTYIPFYRITEGQNKVIITDRMWARLLSSTNQPSFTIAKTVSEEKREEEANGHE*

>Glyma05g36050.3   sequence type=predicted peptide   gene model=Glyma05g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSPNSKPKIIRGTAGYVLEDVPHMADYIPDLPTYSNPLQNNPAYSVVKQYFVHIDDSVPQKIIANKDSPRGVHFRRAGPRQRVYFESDDVQAAIVTCGGLCPGLNTVIRELVCALYHMYGVKKILGINGGYKGFYAHNTITLTPKSVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQRGADRIFEEIRRRRLKVAVVGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESGENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFHLEGPGGLFEFTEKRLKENGHMVIVIAEGAGQELVSESIQSLHKQDASGNKLLQDVGLWISQKIKDHFTKQKTMTINLKYIDPTYMIRAVPSNASDNVYCTLLAQSAVHGAMAGYTGFTSGLVNGRQTYIPFYRITEGQNKVIITDRMWARLLSSTNQPSFTIAKTVSEEKREEEANGHE*

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