Glyma05g36020 - SoyBase

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Report for Sequence Feature Glyma05g36020

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39939465
stop:	39941897
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g36020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56610	AT	Annotation by Michelle Graham. TAIR10: Phosphotyrosine protein phosphatases superfamily protein \| chr5:22916738-22918137 FORWARD LENGTH=228	SoyBase	E_val: 2.00E-98	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0043407	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004439	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG1719	KOG	Dual specificity phosphatase	JGI		ISS
PTHR10159	Panther	DUAL SPECIFICITY PROTEIN PHOSPHATASE	JGI		ISS
PTHR10159:SF5	Panther	PTEN-RELATED PHOSPHATASE (PLIP)	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
UniRef100_G7L7D1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein-tyrosine phosphatase mitochondrial n=1 Tax=Medicago truncatula RepID=G7L7D1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K606	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K606_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g36020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g36020 not represented in the dataset	Glyma05g36020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g36020

Paralog	Evidence	Comments
Glyma08g03600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g36020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g225200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g36020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g36020

Limit To All Plant Sequences

>Glyma05g36020.4   sequence type=transcript   gene model=Glyma05g36020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTAATTTTGTGGAGTAGCAAGGGCATTTTAGTTAAAGGACCTTCCACACTCTAGGAGTACTCTTTCTTATGATTTATGAACATCTCACCACTCTCAGCCCCCAAACTTCGTGCTTTTCTCTTTTTCCCATCGATCTCGTTTCTCCCAAATTCGAGTCTTCCTTCGTTTCCAAGTCAGCGTTAAGGTACGATTGCTTTTCGATTCCCTTCAATTTTCATGTTTCTAACCGAACCAAATTGGGATCGGTGTTGCGGTTTTAGGGTTTAGTTTGGCGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACCATGAAGAGAAGTTTGAGAGGCAGATTGTGAGCGTTGATGCCAAGAGAGCGTTGGTTGGAGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAACGAGCCCTATGAAACCTTGGTGCCATCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATAGCACAGGTGATGCTGGTATGGAACTGGCGATAGTTCCTAAAATGCTGAAGACTAAGCCCATGATTGCAAGATTATCTTGTCTGTTTGCATCCTTAAAAGTATCCGGCAGTAGTGTACCAATGACCAGGCGGTTGCCGGTTTCTGAGTCACGTGCTTGCTAAGTCATCTTGATATGCTGTCAAGCAGGTGGCCTGTACAGAAGATGATGATGAAAATAAGTGAAGTTTGATAATTTCCCAAAGTCGGTACAATTGTGTTTCATGAAGAGAGGATGCATAGAAAGAAAGAAAGATAGGAGAGAAGGTTTCTCCAATGTTGTGTTACAGGTTAAGAGGAACATGTAGTTTCTTGTACATATATTTGCCTTTTGCATGTTTGTTAATCGAATGGAATCCTCGTGCAAGTTAAAGCATTATTTATGTGAGATCAGGTGGTGACCTAATGTTTACTTGTCTTTACTGACACAAAACCATAGCCAAATCACCTACCTAATTTGTACCCCGAATACTATGCAATATTGTTGTCAAACTCCCGAGTTAACCAATTGACTCTCAAAAGTTTTCAATTCTAGATAGAGAAAATGAGTTAATTCTCAATTAAACTCATGGATAAATTCAGTAGACTTTTTACTTGAGTCGAGAAGAGTCTTTAGTTTGAAATCAAATTCAATGTTTTACCCCGATTCACCCTAGTGATACTGTTTTATGCTACTCTTCCATTGTTTTTGACT

Coding sequences of Glyma05g36020

Limit To All Plant Sequences

>Glyma05g36020.3   sequence type=CDS   gene model=Glyma05g36020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACCATGAAGAGAAGTTTGAGAGGCAGATTGTGAGCGTTGATGCCAAGAGAGCGTTGGTTGGAGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAACGAGCCCTATGAAACCTTGGTGCCATCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATAGCACAGGTGATGCTGGTATGGAACTGGCGATAGTTCCTAAAATGCTGAAGACTAAGCCCATGATTGCAAGATTATCTTGTCTGTTTGCATCCTTAAAAGTATCCGGCAGTAGTGTACCAATGACCAGGCGGTTGCCGGTTTCTGAGTCACGTGCTTGCTAA

>Glyma05g36020.4   sequence type=CDS   gene model=Glyma05g36020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACCATGAAGAGAAGTTTGAGAGGCAGATTGTGAGCGTTGATGCCAAGAGAGCGTTGGTTGGAGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAACGAGCCCTATGAAACCTTGGTGCCATCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATAGCACAGGTGATGCTGGTATGGAACTGGCGATAGTTCCTAAAATGCTGAAGACTAAGCCCATGATTGCAAGATTATCTTGTCTGTTTGCATCCTTAAAAGTATCCGGCAGTAGTGTACCAATGACCAGGCGGTTGCCGGTTTCTGAGTCACGTGCTTGCTAA

Predicted protein sequences of Glyma05g36020

Limit To All Plant Sequences

>Glyma05g36020.3   sequence type=predicted peptide   gene model=Glyma05g36020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIEELDDGECSRDHEEKFERQIVSVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKKLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPATALEYVRSRRPRVLLAPSQWKAVQNYNKRRPSPLPYSPSGDAVLITKADLEGYHSTGDAGMELAIVPKMLKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC*

>Glyma05g36020.4   sequence type=predicted peptide   gene model=Glyma05g36020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIEELDDGECSRDHEEKFERQIVSVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKKLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPATALEYVRSRRPRVLLAPSQWKAVQNYNKRRPSPLPYSPSGDAVLITKADLEGYHSTGDAGMELAIVPKMLKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC*

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