SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19730 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr5:6670562-6673202 FORWARD LENGTH=383 | SoyBase | E_val: 0 | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0030599 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity | SoyBase | N/A | ISS |
| PTHR22931 | Panther | PHOSPHOENOLPYRUVATE DIKINASE-RELATED | JGI | ISS | |
| PTHR22931:SF5 | Panther | METHYLESTERASE INHIBITOR-RELATED | JGI | ISS | |
| PF01095 | PFAM | Pectinesterase | JGI | ISS | |
| UniRef100_I1K5Z7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1K5Z7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339543 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339543 related cluster n=1 Tax=unknown RepID=UPI0002339543 | SoyBase | E_val: 0 | ISS |
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Glyma05g35930 not represented in the dataset |
Glyma05g35930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g03700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g226000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g35930.1 sequence type=CDS gene model=Glyma05g35930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAATTTGCATTTTATTTTCTATGGTTTAGTAGTTATTCTTCTTCTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCAGCCTAAGCCAGGGAATGGATTATCTACCAACATGACCAGAGTCGAATTTTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTAGGTGGCCTCAAACATTCTGTCTTTAGGACAGCAAATAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCATGGTAAAGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTTCATGCAGGGGTTTACACTGAGAAAGTGAACATTTCTCCTTTCAAATCCTTCATAACAATACAAGGAGAAGGAGCAGATAAGACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACATTTGCTGTGAATTCAGCTTATTTCATAGCCAAGAACATCACATTCAAAAACACTGCCCCAATTCCAGCACCAGGAGCAGTTGGAAAGCAGGGAGTGGCATTGAGAATTTCAGCAGACACAGCAGTATTCCAAGGTTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATATTGGTAGGCATTACTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTGTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCCTTAACAGCGCAAGGAAGGAGCAGTTTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCTTTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATCTCTCTCTTTGA
>Glyma05g35930.1 sequence type=predicted peptide gene model=Glyma05g35930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNLHFIFYGLVVILLLQNPSATQCHTKGIQPKPGNGLSTNMTRVEFSEQQFMKWVKFVGGLKHSVFRTANNKLFPSHTLHVSKKHGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNISPFKSFITIQGEGADKTIVQWGDTAQSQPLGTYGSATFAVNSAYFIAKNITFKNTAPIPAPGAVGKQGVALRISADTAVFQGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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