Report for Sequence Feature Glyma05g35900
Feature Type: gene_model
Chromosome: Gm05
Start: 39857578
stop: 39859713
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g35900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G29140 AT
Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr4:14369148-14370746 FORWARD LENGTH=532
SoyBase E_val: 0 ISS
GO:0006855 GO-bp
Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport
SoyBase N/A ISS
GO:0031348 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response
SoyBase N/A ISS
GO:0046685 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0015238 GO-mf
Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity
SoyBase N/A ISS
GO:0015297 GO-mf
Annotation by Michelle Graham. GO Molecular Function: antiporter activity
SoyBase N/A ISS
KOG1347
KOG
Uncharacterized membrane protein, predicted efflux pump
JGI ISS
PTHR11206 Panther
MULTIDRUG RESISTANCE PUMP
JGI ISS
PTHR11206:SF38 Panther
NA+ DRIVEN MULTIDRUG EFFLUX PUMP
JGI ISS
PF01554 PFAM
MatE
JGI ISS
UniRef100_B9RKH9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9RKH9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1K5Z5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K5Z5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g35900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g35900
Paralog Evidence Comments
Glyma08g03720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g35900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g226400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g35900
Coding sequences of Glyma05g35900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g35900.1 sequence type=CDS gene model=Glyma05g35900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAACAAAAACAGAGGAAGGAGTAGATTACACGTTGATGGAGGGAGCAGCAGAAAAGGAGAGGCTGCAGTGTTGGAGCATAAGGAGAGAAGTGAAAGCGGTGGTGGAGCTGGCGTTTCCGATAGGAATAACGGCGTTGATATTCTACGCGCGTTCCATGGTATCGATGCTGTTCCTGGGACACCTGGGAGAGTTAGAACTGGCAGCAGGGTCCCTAGGAATGGCGTTCGCGAACATCACAGGTTATTCGGTGCTGTCGGGTCTAGCACTTGGGATGGAACCGATGTGCTCGCAAGCCTTCGGAGCAAAACGCGTGAAGGTGTTGTCGTTGACCCTCCACCGCTGCGTCATGTTCCTATTAGTCTGCTCCATCCCAATATCACTCCTTTGGCTCAACATGTCCAGCATCCTCCTTCTCTTGCACCAGGACCCAAACATCACCCTCATGGCCCACACCTACCTCATCTTCTCCCTCCCTGACCTCCTCACCCACTCCTTCCTTCACCCAATCCGCATTTACCTTCGCGCCCAGGGCGTCACCCACCCGGTCACCTTAGCCTCCCTCGCCGGAACCCTCCTCCACCTCCCCTTCAACTACCTCCTCGTCACGCGCCTCCGCCTCGGCCTCGCCGGTGTCGCCGCTGCCTCCGCCGCTTCCAACCTCTCCATCCTCCTCTTCCTCGGAGCCGCCGTTTGTTTCACCGGCCTGCACTGCGCCGCCCCGAGCCGAGACTGTTTCAGCGGCTGGAAGCCGCTGCTTCGGCTCGCCGCGCCGAGCTGCGTCTCTGTTTGCTTGGAGTGGTGGTGGTATGAGATCATGATCATTCTTTGCGGGATTCTCGTGGACCCCACCGCTACCGTTGCTTCCATGGGAATACTCATTCAAACCACTTCACTCATCTATGTTTTCCCCTCCTCGCTTGGTTTCGCGGTTTCCACACGCGTCGGGAACGAGCTCGGAGCGAATCGTCCTTCTCGAGCCAAATTATCCGCGGTGGTTTCTGTTTTTCTCGCCGCGATTATGGGGTTCTCGGCGATGTTTTTCGCCGTCGGGATGCGGCGGCGGTGGGGGAGGATGTTCACCGCCGACGAGGACATAATAAGGATCACGTCGATGGCGCTGCCGATCCTCGGGATTTGTGAACTCGGGAACTGTCCGCAGACGGTGGGGTGCGGCATCGTTAGAGGGATGGCGCGGCCGAACACGGCGGCCAATGTGAACCTGGGCGCGTTCTATTTGGTCGGGATGCCCGTGGCGGTGGGGCTTGGGTTCTGGTTTGACGTTGGGTTCTGTGGGCTGTGGCTGGGCCTGCTCTCGGCCCAGGTGTGTTGCGCGGGACTTATGTTGTATGTGATTGGGACCACCGATTGGGAGTTTGAAGCCCATCGGGCCCAGTGGCTGACGTTGGTCGAAGATGGAGTGATGGACGGACAGAAACAGCCGTTGACAAGCGTTGTTACCGAGGCTCCCTCGACTTGA
Predicted protein sequences of Glyma05g35900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g35900.1 sequence type=predicted peptide gene model=Glyma05g35900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTKTEEGVDYTLMEGAAEKERLQCWSIRREVKAVVELAFPIGITALIFYARSMVSMLFLGHLGELELAAGSLGMAFANITGYSVLSGLALGMEPMCSQAFGAKRVKVLSLTLHRCVMFLLVCSIPISLLWLNMSSILLLLHQDPNITLMAHTYLIFSLPDLLTHSFLHPIRIYLRAQGVTHPVTLASLAGTLLHLPFNYLLVTRLRLGLAGVAAASAASNLSILLFLGAAVCFTGLHCAAPSRDCFSGWKPLLRLAAPSCVSVCLEWWWYEIMIILCGILVDPTATVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPSRAKLSAVVSVFLAAIMGFSAMFFAVGMRRRWGRMFTADEDIIRITSMALPILGICELGNCPQTVGCGIVRGMARPNTAANVNLGAFYLVGMPVAVGLGFWFDVGFCGLWLGLLSAQVCCAGLMLYVIGTTDWEFEAHRAQWLTLVEDGVMDGQKQPLTSVVTEAPST*