SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55205 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20594584-20595677 FORWARD LENGTH=97 | SoyBase | E_val: 6.00E-20 | ISS |
| UniRef100_B8AFN6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P0413A11.15 protein n=2 Tax=Oryza sativa RepID=B8AFN6_ORYSI | SoyBase | E_val: 2.00E-08 | ISS |
| UniRef100_I1K5V9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K5V9_SOYBN | SoyBase | E_val: 4.00E-54 | ISS |
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Glyma05g35550 not represented in the dataset |
Glyma05g35550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g04190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g230000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g35550.1 sequence type=CDS gene model=Glyma05g35550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGGCATCATTGAAGGTAATGTGTAGGTTACAGAGTGTTATTGCTCATAACCATAACAAGTTCACCAAACCCTCTCTCTCTCCTCTTTCTCTCTCTGCGCCACGCCTTTCTCGCACTTCCCGGTTACCAGTGGAATTGGGATGCTTGGAATCAATGATGCCGTTTCATAGCGTTGTAGCTTCAGCTCGATTAGTGTCAAGCTTGTCTATTGAGTCTCTCGGTTGGGGATTAGTTCCTCAAGGTATTTCCATGCCTTTATGA
>Glyma05g35550.1 sequence type=predicted peptide gene model=Glyma05g35550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMASLKVMCRLQSVIAHNHNKFTKPSLSPLSLSAPRLSRTSRLPVELGCLESMMPFHSVVASARLVSSLSIESLGWGLVPQGISMPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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