Report for Sequence Feature Glyma05g35350
Feature Type: gene_model
Chromosome: Gm05
Start: 39419745
stop: 39424648
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g35350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G24503 AT
Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 2C4 | chr3:8919732-8923029 REVERSE LENGTH=501
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009627 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance
SoyBase N/A ISS
GO:0009699 GO-bp
Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0034976 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004028 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity
SoyBase N/A ISS
GO:0004029 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0050269 GO-mf
Annotation by Michelle Graham. GO Molecular Function: coniferyl-aldehyde dehydrogenase activity
SoyBase N/A ISS
KOG2450
KOG
Aldehyde dehydrogenase
JGI ISS
PTHR11699 Panther
ALDEHYDE DEHYDROGENASE-RELATED
JGI ISS
PTHR11699:SF46 Panther
SUCCINATE-SEMIALDEHYDE DEHYDROGENASE-RELATED
JGI ISS
PF00171 PFAM
Aldehyde dehydrogenase family
JGI ISS
UniRef100_G7L8Y5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Medicago truncatula RepID=G7L8Y5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K5U2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5U2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g35350
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g35350
Paralog Evidence Comments
Glyma08g04370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g35350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g231800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g35350
Coding sequences of Glyma05g35350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g35350.1 sequence type=CDS gene model=Glyma05g35350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGATTAATACGAGTGGTGCTAGTTCTGTTTGCATATTATTACAAGTCTCAGTCCCCAACGACTGGTTCTGCTTTCTCTCTGTTGCTTCGATTCATTCACACAACTCAACCATGACTTTCAATAATGGCGATGCAGCTGCTGCCTCCCTCAACAAGGTCCCCACGGTCAACTTCACCAAGCTCTTCATTGACGGACACTTCGTTCACTCTGTGTCAGGAAAGACATTTGAGACAATAGATCCAAGAACAGGAGATGTTATAGCGAGGATCAGCGAGGGAGATAAAGAAGACATTGACATTGCTGTTAAAGCAGCACGTCATGCATTTGACAATGGTCCATGGCCTCGCCTTCCCGGTTCTGAGAGAGGAAGAATTTTGCTGAAATGGGCAGAGCTAATAGAGGAAAATGCAGAAGAACTTGCGGCACTAGATGCCATTGATGCGGGGAAGTTGTACCATATGTGTAGGAATTTGGAAGTTCCAGCAGCAGCAAACACTCTTCGTTACTATGCAGGTGCTGCCGATAAGATTCATGGCGAGGTGTTGAAAATGTCCCGAGACTTCCATGCCTATACATTGCTTGAACCACTTGGTGTTGTGGGACACATTACTCCCTGGAATTTCCCCAATACCATGTTCTACATCAAGGTTGCTCCTTCTTTAGCTGCTGGCTGCACCATGGTCCTCAAGCCCGCCGAGCAAACACCCCTCTCTGCTTTGTTTAATGCTCATCTTGCTAAATTGGCTGGAATCCCAGATGGAGTGATCAATGTAGTGCCTGGATTTGGCCCAACTGCTGGTGCTGCATTAAGCTCACACATGGATGTTGATAAGGTTAGCTTTACTGGTTCAACACAAACAGGCCGTGAGATAATGCAGGCTGCAGCTAAGAGTAACTTGAAACAAGTTTCACTTGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCTGATATAGACAAAGCTGCTGAGCTAGCTCTACTAGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCAAGTTCCCGTGTGCTTGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAACTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCCTTTGATCCTAAAGTTCAACAAGGCCCTCAGGTTGACAAGGAACAATTTGAAAAGGTCCTTTCATATATTGAGCATGGAAAGAAAGAAGGAGCTACCCTTTTGACCGGGGGTAAAACAGTGGGAAACAAGGGCTACTTTATTGAGCCAACAATTTTCTCCAATATAAGGGAGGATATGCTTATAGCACAGGATGAAATATTTGGCCCAGTAATGGCACTGAAGAAGTTTAAGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACCAAGTATGGCCTAGCAGCAGGCATAGTGACCAAGAATTTGGATACGGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACTATTTGGATCAACTGCTATTTTGCCTTTGGCGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTGGAAGCCCTTCACAAGTACCTACAAGTTAAATCTGTTGTTACTCCCCTTTACAATTCACCCTGGCTTTGA
Predicted protein sequences of Glyma05g35350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g35350.1 sequence type=predicted peptide gene model=Glyma05g35350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSINTSGASSVCILLQVSVPNDWFCFLSVASIHSHNSTMTFNNGDAAAASLNKVPTVNFTKLFIDGHFVHSVSGKTFETIDPRTGDVIARISEGDKEDIDIAVKAARHAFDNGPWPRLPGSERGRILLKWAELIEENAEELAALDAIDAGKLYHMCRNLEVPAAANTLRYYAGAADKIHGEVLKMSRDFHAYTLLEPLGVVGHITPWNFPNTMFYIKVAPSLAAGCTMVLKPAEQTPLSALFNAHLAKLAGIPDGVINVVPGFGPTAGAALSSHMDVDKVSFTGSTQTGREIMQAAAKSNLKQVSLELGGKSPLIIFDDADIDKAAELALLGILYNKGEVCVASSRVLVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKEQFEKVLSYIEHGKKEGATLLTGGKTVGNKGYFIEPTIFSNIREDMLIAQDEIFGPVMALKKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDHGLEALHKYLQVKSVVTPLYNSPWL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
