Glyma05g35295 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g35295): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g35295): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g35295

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39367165
stop:	39370319
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g35295

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24450	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:8880286-8881611 REVERSE LENGTH=140	SoyBase	E_val: 2.00E-39	ISS
GO:0006825	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion transport	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF53	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9RPB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast-targeted copper chaperone, putative n=1 Tax=Ricinus communis RepID=B9RPB5_RICCO	SoyBase	E_val: 1.00E-60	ISS
UniRef100_UPI000233A9F3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A9F3 related cluster n=1 Tax=unknown RepID=UPI000233A9F3	SoyBase	E_val: 3.00E-90	ISS

Expression Patterns of Glyma05g35295

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g35295 not represented in the dataset	Glyma05g35295 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g35295

Paralog	Evidence	Comments
Glyma08g04430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g35295 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g232300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g35295

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g35295

Limit To All Plant Sequences

>Glyma05g35295.2   sequence type=transcript   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTACTTATTGTATCATTTTTTTCCCTTTGCACTTATTGATATAAAATTATCTACTGACATAATTTGGAATGTTAATACATTAAGCATGCAAAGTCTCTCAATCAGTCGTATTTATTCCAATTATGTATAATTTATAATGTAGAAAGATGTCAATCAAGCAATGTGCACTGTTGCTATATGCGGAAAGTTTATTTACTATGCATGAACATTTTTAATTAAAAGGATCTAATATAATGCTCAAAACTTTAAAGAATTCCCGATTATGCCGTATTGCCATGCGTTTTCTTTTGTCTTTAGTCTTCACTTTGCGTCACAGTTGTATTACCAAATATGCCTCGACTTTGTTCCTTTAATATTTGACCTTTTACCATGGTTATAGTTCATTAATTTGGATGTTACACTTATCCACATGGATCTGTAATTGAATATTATAGTATATACATATTCTTTTCCTCCAGCTTGGGCTAAGTCCCATCACATTCACACATAAAGTTTGTCACTTCCACTTCCCTTCCTGTGATCCTTTTATTATCTCTCATCTTTGATCATGAATCATGTTTCTCCTCTTCTGATACGTAGTATTTGGTTCTTCAATAGCTAAAACAGTCAATGAGACGCTTCTCAAACCCTGTTTCTCCTTTTATGACACTAAATGGTTGGTATCTTGTGTCTTCATTGAATTTTAGTTTGGTCAGTGTTTTAATTAGTGGTTCATCACATGACAAGTTCCAATCGCACTGGGTCTCTTTTCTATTATTGTTCAGGATAAATTTCATTGGGTTTTGTGCAGTTTGGTTTTCCCAATACAATTTGACCTTAAGCTTCTTTGTTTTTTCCTCCCTCTCCTCCTTAACATAAGGTATTACAGCAAACCAGCTGATATGGATTTTGTGTCATTCAAGTCATTGGTTGAGACTTGAGCAAGGGAGGTTAGAGTTGTGAGAGCAGAGAGGTTCTTTCAGTTCAGATTTGCCAGTAAGAAGTTGAAATGGGGAAACTTAGTTGGATGTTGGACAAGTTCTGTATTTCTTCTTGTTCAAACACCTGCTTCTGTGTAAATTCCATGGAATTTGAAGATGAGTTTGAGAGTAAGCCTTTGATTGCAAGTGACAGTGATCATAAACTAAGGCTGAAGGATGTAGTTAATGGAAAGCAGACATTGGCTTTTCAATTGAAACCCAAGATAGTGATATTGAGGGTGTCCATGCATTGCCATGGCTGTGCAAAAAGAGTTGAGAAACATATCTCAAAGCTGGAAGGAGTGAGCTCATACAAGGTAGATCTGGAAACCAAAATGGTAGTGGTTTGTGGCGACATTCTCCCTTCAGAAGTGTTGGAAAGCGTATCCAAGGTTAAAAATGCAGAGCTTTGGAATTCTCCATGCTAATTAATAAGGAAAAATTATGCACAAAACACCATCGGCCACAACAGATTCCACAAAAGTCATTTTTGTAGCTATTATTATACTGATATAATATAATAATGCTAATACCCCGCGTCATGTTCCAGCAATTCTCTTGCACGAAAGAAAAAGAAAATTAAAGAAATGCATTAATTAATGTCTCTCCCTCTCTTCAGTACATTTGGCTTTGACATTGATGGCTAAAAATTTCACTGTTGTCAAGTTGCACCCCAAAAAAATTTAGTGATCTCTCTATTCTTCGTTTTATTAATGTCTGTTCAGGAGCTTTCTCTAGACACTATAGTAGTTCAAATCTTGTTTCCAATGAAATTAATAATTAATAATGCTACAGAAATTTAAAGAAAG

>Glyma05g35295.3   sequence type=transcript   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTACTTATTGTATCATTTTTTTCCCTTTGCACTTATTGATATAAAATTATCTACTGACATAATTTGGAATGTTAATACATTAAGCATGCAAAGTCTCTCAATCAGTCGTATTTATTCCAATTATGTATAATTTATAATGTAGAAAGATGTCAATCAAGCAATGTGCACTGTTGCTATATGCGGAAAGTTTATTTACTATGCATGAACATTTTTAATTAAAAGGATCTAATATAATGCTCAAAACTTTAAAGAATTCCCGATTATGCCGTATTGCCATGCGTTTTCTTTTGTCTTTAGTCTTCACTTTGCGTCACAGTTGTATTACCAAATATGCCTCGACTTTGTTCCTTTAATATTTGACCTTTTACCATGGTTATAGTTCATTAATTTGGATGTTACACTTATCCACATGGATCTGTAATTGAATATTATAGTATATACATATTCTTTTCCTCCAGCTTGGGCTAAGTCCCATCACATTCACACATAAAGTTTGTCACTTCCACTTCCCTTCCTGTGATCCTTTTATTATCTCTCATCTTTGATCATGAATCATGTTTCTCCTCTTCTGATACGTAGTATTTGGTTCTTCAATAGCTAAAACAGTCAATGAGACGCTTCTCAAACCCTGTTTCTCCTTTTATGACACTAAATGGTATTACAGCAAACCAGCTGATATGGATTTTGTGTCATTCAAGTCATTGGTTGAGACTTGAGCAAGGGAGGTTAGAGTTGTGAGAGCAGAGAGGTTCTTTCAGTTCAGATTTGCCAGTAAGAAGTTGAAATGGGGAAACTTAGTTGGATGTTGGACAAGTTCTGTATTTCTTCTTGTTCAAACACCTGCTTCTGTGTAAATTCCATGGAATTTGAAGATGAGTTTGAGAGTAAGCCTTTGATTGCAAGTGACAGTGATCATAAACTAAGGCTGAAGGATGTAGTTAATGGAAAGCAGACATTGGCTTTTCAATTGAAACCCAAGATAGTGATATTGAGGGTGTCCATGCATTGCCATGGCTGTGCAAAAAGAGTTGAGAAACATATCTCAAAGCTGGAAGGAGTGAGCTCATACAAGGTAGATCTGGAAACCAAAATGGTAGTGGTTTGTGGCGACATTCTCCCTTCAGAAGTGTTGGAAAGCGTATCCAAGGTTAAAAATGCAGAGCTTTGGAATTCTCCATGCTAATTAATAAGGAAAAATTATGCACAAAACACCATCGGCCACAACAGATTCCACAAAAGTCATTTTTGTAGCTATTATTATACTGATATAATATAATAATGCTAATACCCCGCGTCATGTTCCAGCAATTCTCTTGCACGAAAGAAAAAGAAAATTAAAGAAATGCATTAATTAATGTCTCTCCCTCTCTTCAGTACATTTGGCTTTGACATTGATGGCTAAAAATTTCACTGTTGTCAAGTTGCACCCCAAAAAAATTTAGTGATCTCTCTATTCTTCGTTTTATTAATGTCTGTTCAGGAGCTTTCTCTAGACACTATAGTAGTTCAAATCTTGTTTCCAATGAAATTAATAATTAATAATGCTACAGAAATTTAAAGAAAG

Coding sequences of Glyma05g35295

Limit To All Plant Sequences

>Glyma05g35295.1   sequence type=CDS   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAACTTAGTTGGATGTTGGACAAGTTCTGTATTTCTTCTTGTTCAAACACCTGCTTCTGTGTAAATTCCATGGAATTTGAAGATGAGTTTGAGAGTAAGCCTTTGATTGCAAGTGACAGTGATCATAAACTAAGGCTGAAGGATGTAGTTAATGGAAAGCAGACATTGGCTTTTCAATTGAAACCCAAGATAGTGATATTGAGGGTGTCCATGCATTGCCATGGCTGTGCAAAAAGAGTTGAGAAACATATCTCAAAGCTGGAAGGAGTGAGCTCATACAAGGTAGATCTGGAAACCAAAATGGTAGTGGTTTGTGGCGACATTCTCCCTTCAGAAGTGTTGGAAAGCGTATCCAAGGTTAAAAATGCAGAGCTTTGGAATTCTCCATGCTAA

>Glyma05g35295.2   sequence type=CDS   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAACTTAGTTGGATGTTGGACAAGTTCTGTATTTCTTCTTGTTCAAACACCTGCTTCTGTGTAAATTCCATGGAATTTGAAGATGAGTTTGAGAGTAAGCCTTTGATTGCAAGTGACAGTGATCATAAACTAAGGCTGAAGGATGTAGTTAATGGAAAGCAGACATTGGCTTTTCAATTGAAACCCAAGATAGTGATATTGAGGGTGTCCATGCATTGCCATGGCTGTGCAAAAAGAGTTGAGAAACATATCTCAAAGCTGGAAGGAGTGAGCTCATACAAGGTAGATCTGGAAACCAAAATGGTAGTGGTTTGTGGCGACATTCTCCCTTCAGAAGTGTTGGAAAGCGTATCCAAGGTTAAAAATGCAGAGCTTTGGAATTCTCCATGCTAA

>Glyma05g35295.3   sequence type=CDS   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAACTTAGTTGGATGTTGGACAAGTTCTGTATTTCTTCTTGTTCAAACACCTGCTTCTGTGTAAATTCCATGGAATTTGAAGATGAGTTTGAGAGTAAGCCTTTGATTGCAAGTGACAGTGATCATAAACTAAGGCTGAAGGATGTAGTTAATGGAAAGCAGACATTGGCTTTTCAATTGAAACCCAAGATAGTGATATTGAGGGTGTCCATGCATTGCCATGGCTGTGCAAAAAGAGTTGAGAAACATATCTCAAAGCTGGAAGGAGTGAGCTCATACAAGGTAGATCTGGAAACCAAAATGGTAGTGGTTTGTGGCGACATTCTCCCTTCAGAAGTGTTGGAAAGCGTATCCAAGGTTAAAAATGCAGAGCTTTGGAATTCTCCATGCTAA

Predicted protein sequences of Glyma05g35295

Limit To All Plant Sequences

>Glyma05g35295.1   sequence type=predicted peptide   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKLSWMLDKFCISSCSNTCFCVNSMEFEDEFESKPLIASDSDHKLRLKDVVNGKQTLAFQLKPKIVILRVSMHCHGCAKRVEKHISKLEGVSSYKVDLETKMVVVCGDILPSEVLESVSKVKNAELWNSPC*

>Glyma05g35295.2   sequence type=predicted peptide   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKLSWMLDKFCISSCSNTCFCVNSMEFEDEFESKPLIASDSDHKLRLKDVVNGKQTLAFQLKPKIVILRVSMHCHGCAKRVEKHISKLEGVSSYKVDLETKMVVVCGDILPSEVLESVSKVKNAELWNSPC*

>Glyma05g35295.3   sequence type=predicted peptide   gene model=Glyma05g35295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKLSWMLDKFCISSCSNTCFCVNSMEFEDEFESKPLIASDSDHKLRLKDVVNGKQTLAFQLKPKIVILRVSMHCHGCAKRVEKHISKLEGVSSYKVDLETKMVVVCGDILPSEVLESVSKVKNAELWNSPC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain