Glyma05g35105 - SoyBase

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Report for Sequence Feature Glyma05g35105

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39220731
stop:	39225421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g35105

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73850	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1666) \| chr1:27767375-27770386 FORWARD LENGTH=635	SoyBase	E_val: 3.00E-135	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR10759	Panther	60S RIBOSOMAL PROTEIN L34	JGI		ISS
PTHR10759:SF1	Panther	60S RIBOSOMAL PROTEIN L34	JGI		ISS
PF07891	PFAM	Protein of unknown function (DUF1666)	JGI		ISS
UniRef100_Q9LTR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF36750.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LTR6_ARATH	SoyBase	E_val: 1.00E-29	ISS
UniRef100_UPI00023393C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023393C4 related cluster n=1 Tax=unknown RepID=UPI00023393C4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g35105

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g35105 not represented in the dataset	Glyma05g35105 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g35105

Paralog	Evidence	Comments
Glyma08g04600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g35105 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g234100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g35105

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g35105

Limit To All Plant Sequences

>Glyma05g35105.2   sequence type=transcript   gene model=Glyma05g35105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACCTGCAATCTTAGTAACCACGTTAAAGACAAGGATCAATAAAGAGGAGTGCCACAAGAATTCGCACTTGACACAGCCAACACTATCTTTTCCAAATGGATCTTTATTCCATCAATAGACATGAACCAGTTGGGGATATCAGAGATTTTGACATTTCAGTTCAGACAATGTTATTGTTGACCAAGAAGGATACACATTACAAAAGCATCTGAAGGGCACTTAAAGGAGTTGCTTTGCTTAGTGGTGGAGTCCTCTGAGGCTCACTTTGGAGCCACCACAAAGAAAATGCCGCTATGTCCCAAAGAAGAAGCACTTGTTAAACTCTTCTACAATGTCTCTAGCCCTTTCCAGCTTCTCTTCCTCATTCTCTTCTCCTCTGCCGTTTTCCTTGTCACCTTCTTAACCTTCACAGGCAGATTCCCCTTAATCCAAAGGGATCAAGAATATGAATATGTGTATACCGAGGATGAAGAAGAAGAGGAAGAAGAAACTCAAGAAGGGTATTCTTGTGTTGATTCTACTGACAGATTAGAAGTAACTTGTGGCAAGGAGACTCGTGTGTTTCTGCACAATGAGGGGCATCAGAGGACTCATTCTTATTCGGAAGAATTCATAAGCCCCGAGGAGAGCTTGAATGAAGAGTCAGAAGAAAAGCATTATTCTGAAACGTTGTCTCTCCATAACTCAGCACAAGTTTCTGACTTCGAAAATGAAGAAGCGGAAACGGTTCAAGTAGACTTTCCAGCAAGAGATCCCGATTCTGCCCAGGTTGAAAGAAGGACCACCTCTCCCATCAACCTCACCGCATACAAAAGAAACAAAAACCGTGACGACGATCATGTTAGCGTTGAAATTATTAAAAACAAGAAGGTGCAAGAGACAAACCTTGCAAGGGATGAGAGATTCTTTGTTTTTGCTTCTACCCAATTGCAGAGTAAGAAGTTAATGATTGAAGAGAGGGATGATGAGTCCTCGAAATGGAAGAGCTCCATCATTGGCAGGGATTCTGATACTGAAGACGCATTTTCTTCTTCATCAAGAAGAAGTTGCCCCAAGTGGGAATCATACACATTGTTCCAAAAATATGATGAAGAGATGGCAATCCTAGACAGAATTAGTGCACAGAAACATCATGAAACTGAGTCATTAAGGTCCATCCAAATGTCTCCAAGATCAATGTCAGAGCGTATTGTGTACAAGTTTCAAAATGTAAATAAAAAGCCCGCTGAGGTTGGTCACAACCCATATCGTGAACTAGAGGCTGCATATGTTGCACAAATTTGTTTAACATGGGAAGCCCTTAGTTGGAACTACAAAAATTTTCGTTCCAAACATGCCTCACGCCAGGATCATGATACCGGTTGTTCTGCCACCGTTGCACAGCAATTCCAGCAATTTCAGGTTTTGTTACAGAGATACATTGAGAATGAGCCTTATGAGCATGGCAGGAGACCTGAGATCTTTGCTAGAATGAGGCTTTTGGCACCAAACTTGCTCCTAGTGCCAGAATATCAAGATTTAGAGGAGGATCAGAAGGATGGTGGTTTTCAATGCAAAATATCATCAGCTTCATTTCTAAAGATAATGGAGGACGGGATCAAGACATTCATGAATTTTCTGAAGAATGATAAAGAGAAACCCTGTCAGATCCTTGCAGCCTGCTTTAGGAGAAACCAAAGAGGCACGGTTGATCCAGCACTACTCCGACTAATGAAGAAGGTTAATCAAAAGAAGAGGGTGAAGGTTAAGGATCTTAACCATGCAGGGAAATGCTTGAGGAAGAGAAAGTTAAAGGTGGAAAAGGATATGGATATTTTGATGGCACTCATAGACCTAAAAGTGGTGTCAAGGGTTTTAAGAATGCATGACTTAAGTGAAGAGCAGTTGCACTGGTGTGAGGAGAAGATGAGCAAAGTGAGAATCATGGAAGGGAAACTTCAAAGAGATTATTCCACCCCACTTTTCTTCCCCTCACATTGACCCCTCCAGATGGTATAATTTGGTGACTGGATGATGATTATACTTAACTGCACAAGAGGAATATCCGAATATGCACAGCACTCTTCTGTATTGTTAGATTAAAGAAAATGGAGCTGCCCTGCAAATCAAAATAAAAAAACATGTTGATTGTGGAGCCTAAAATTCAGAGAAAAGAGATAGAGATGAATGTTTATGTTGTTGATGCATTTTGAAGGTAAAAGATCAGAGCCAAATCAAGTATCTACGTTTGATTTGAGCTGAATCAAAAGAAGAATGAACAAGGCTGCAACTGTGCCACACATGAAAGTTGAATAAAACCATAGTCTTAAGGAGAAATAAATAGAGAAAATAATACGAACCAATGGCAGGCCTAACTGTCTACAGGTTACTTGTAAAATTAAATTTACAGCAGCATACAATACGTTATAAGAAATTAACAATAAGAATTTTTAGGAGTATTCAAAATTGTATATTGACATTCAAGTTCTAGTTGACTCCAAAATACAATAAATCATGTCTCTTTTGGGAAACTTGTCC

Coding sequences of Glyma05g35105

Limit To All Plant Sequences

>Glyma05g35105.1   sequence type=CDS   gene model=Glyma05g35105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCTATGTCCCAAAGAAGAAGCACTTGTTAAACTCTTCTACAATGTCTCTAGCCCTTTCCAGCTTCTCTTCCTCATTCTCTTCTCCTCTGCCGTTTTCCTTGTCACCTTCTTAACCTTCACAGGCAGATTCCCCTTAATCCAAAGGGATCAAGAATATGAATATGTGTATACCGAGGATGAAGAAGAAGAGGAAGAAGAAACTCAAGAAGGGTATTCTTGTGTTGATTCTACTGACAGATTAGAAGTAACTTGTGGCAAGGAGACTCGTGTGTTTCTGCACAATGAGGGGCATCAGAGGACTCATTCTTATTCGGAAGAATTCATAAGCCCCGAGGAGAGCTTGAATGAAGAGTCAGAAGAAAAGCATTATTCTGAAACGTTGTCTCTCCATAACTCAGCACAAGTTTCTGACTTCGAAAATGAAGAAGCGGAAACGGTTCAAGTAGACTTTCCAGCAAGAGATCCCGATTCTGCCCAGGTTGAAAGAAGGACCACCTCTCCCATCAACCTCACCGCATACAAAAGAAACAAAAACCGTGACGACGATCATGTTAGCGTTGAAATTATTAAAAACAAGAAGGTGCAAGAGACAAACCTTGCAAGGGATGAGAGATTCTTTGTTTTTGCTTCTACCCAATTGCAGAGTAAGAAGTTAATGATTGAAGAGAGGGATGATGAGTCCTCGAAATGGAAGAGCTCCATCATTGGCAGGGATTCTGATACTGAAGACGCATTTTCTTCTTCATCAAGAAGAAGTTGCCCCAAGTGGGAATCATACACATTGTTCCAAAAATATGATGAAGAGATGGCAATCCTAGACAGAATTAGTGCACAGAAACATCATGAAACTGAGTCATTAAGGTCCATCCAAATGTCTCCAAGATCAATGTCAGAGCGTATTGTGTACAAGTTTCAAAATGTAAATAAAAAGCCCGCTGAGGTTGGTCACAACCCATATCGTGAACTAGAGGCTGCATATGTTGCACAAATTTGTTTAACATGGGAAGCCCTTAGTTGGAACTACAAAAATTTTCGTTCCAAACATGCCTCACGCCAGGATCATGATACCGGTTGTTCTGCCACCGTTGCACAGCAATTCCAGCAATTTCAGGTTTTGTTACAGAGATACATTGAGAATGAGCCTTATGAGCATGGCAGGAGACCTGAGATCTTTGCTAGAATGAGGCTTTTGGCACCAAACTTGCTCCTAGTGCCAGAATATCAAGATTTAGAGGAGGATCAGAAGGATGGTGGTTTTCAATGCAAAATATCATCAGCTTCATTTCTAAAGATAATGGAGGACGGGATCAAGACATTCATGAATTTTCTGAAGAATGATAAAGAGAAACCCTGTCAGATCCTTGCAGCCTGCTTTAGGAGAAACCAAAGAGGCACGGTTGATCCAGCACTACTCCGACTAATGAAGAAGGTTAATCAAAAGAAGAGGGTGAAGGTTAAGGATCTTAACCATGCAGGGAAATGCTTGAGGAAGAGAAAGTTAAAGGTGGAAAAGGATATGGATATTTTGATGGCACTCATAGACCTAAAAGTGGTGTCAAGGGTTTTAAGAATGCATGACTTAAGTGAAGAGCAGTTGCACTGGTGTGAGGAGAAGATGAGCAAAGTGAGAATCATGGAAGGGAAACTTCAAAGAGATTATTCCACCCCACTTTTCTTCCCCTCACATTGA

>Glyma05g35105.2   sequence type=CDS   gene model=Glyma05g35105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCTATGTCCCAAAGAAGAAGCACTTGTTAAACTCTTCTACAATGTCTCTAGCCCTTTCCAGCTTCTCTTCCTCATTCTCTTCTCCTCTGCCGTTTTCCTTGTCACCTTCTTAACCTTCACAGGCAGATTCCCCTTAATCCAAAGGGATCAAGAATATGAATATGTGTATACCGAGGATGAAGAAGAAGAGGAAGAAGAAACTCAAGAAGGGTATTCTTGTGTTGATTCTACTGACAGATTAGAAGTAACTTGTGGCAAGGAGACTCGTGTGTTTCTGCACAATGAGGGGCATCAGAGGACTCATTCTTATTCGGAAGAATTCATAAGCCCCGAGGAGAGCTTGAATGAAGAGTCAGAAGAAAAGCATTATTCTGAAACGTTGTCTCTCCATAACTCAGCACAAGTTTCTGACTTCGAAAATGAAGAAGCGGAAACGGTTCAAGTAGACTTTCCAGCAAGAGATCCCGATTCTGCCCAGGTTGAAAGAAGGACCACCTCTCCCATCAACCTCACCGCATACAAAAGAAACAAAAACCGTGACGACGATCATGTTAGCGTTGAAATTATTAAAAACAAGAAGGTGCAAGAGACAAACCTTGCAAGGGATGAGAGATTCTTTGTTTTTGCTTCTACCCAATTGCAGAGTAAGAAGTTAATGATTGAAGAGAGGGATGATGAGTCCTCGAAATGGAAGAGCTCCATCATTGGCAGGGATTCTGATACTGAAGACGCATTTTCTTCTTCATCAAGAAGAAGTTGCCCCAAGTGGGAATCATACACATTGTTCCAAAAATATGATGAAGAGATGGCAATCCTAGACAGAATTAGTGCACAGAAACATCATGAAACTGAGTCATTAAGGTCCATCCAAATGTCTCCAAGATCAATGTCAGAGCGTATTGTGTACAAGTTTCAAAATGTAAATAAAAAGCCCGCTGAGGTTGGTCACAACCCATATCGTGAACTAGAGGCTGCATATGTTGCACAAATTTGTTTAACATGGGAAGCCCTTAGTTGGAACTACAAAAATTTTCGTTCCAAACATGCCTCACGCCAGGATCATGATACCGGTTGTTCTGCCACCGTTGCACAGCAATTCCAGCAATTTCAGGTTTTGTTACAGAGATACATTGAGAATGAGCCTTATGAGCATGGCAGGAGACCTGAGATCTTTGCTAGAATGAGGCTTTTGGCACCAAACTTGCTCCTAGTGCCAGAATATCAAGATTTAGAGGAGGATCAGAAGGATGGTGGTTTTCAATGCAAAATATCATCAGCTTCATTTCTAAAGATAATGGAGGACGGGATCAAGACATTCATGAATTTTCTGAAGAATGATAAAGAGAAACCCTGTCAGATCCTTGCAGCCTGCTTTAGGAGAAACCAAAGAGGCACGGTTGATCCAGCACTACTCCGACTAATGAAGAAGGTTAATCAAAAGAAGAGGGTGAAGGTTAAGGATCTTAACCATGCAGGGAAATGCTTGAGGAAGAGAAAGTTAAAGGTGGAAAAGGATATGGATATTTTGATGGCACTCATAGACCTAAAAGTGGTGTCAAGGGTTTTAAGAATGCATGACTTAAGTGAAGAGCAGTTGCACTGGTGTGAGGAGAAGATGAGCAAAGTGAGAATCATGGAAGGGAAACTTCAAAGAGATTATTCCACCCCACTTTTCTTCCCCTCACATTGA

Predicted protein sequences of Glyma05g35105

Limit To All Plant Sequences

>Glyma05g35105.1   sequence type=predicted peptide   gene model=Glyma05g35105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLCPKEEALVKLFYNVSSPFQLLFLILFSSAVFLVTFLTFTGRFPLIQRDQEYEYVYTEDEEEEEEETQEGYSCVDSTDRLEVTCGKETRVFLHNEGHQRTHSYSEEFISPEESLNEESEEKHYSETLSLHNSAQVSDFENEEAETVQVDFPARDPDSAQVERRTTSPINLTAYKRNKNRDDDHVSVEIIKNKKVQETNLARDERFFVFASTQLQSKKLMIEERDDESSKWKSSIIGRDSDTEDAFSSSSRRSCPKWESYTLFQKYDEEMAILDRISAQKHHETESLRSIQMSPRSMSERIVYKFQNVNKKPAEVGHNPYRELEAAYVAQICLTWEALSWNYKNFRSKHASRQDHDTGCSATVAQQFQQFQVLLQRYIENEPYEHGRRPEIFARMRLLAPNLLLVPEYQDLEEDQKDGGFQCKISSASFLKIMEDGIKTFMNFLKNDKEKPCQILAACFRRNQRGTVDPALLRLMKKVNQKKRVKVKDLNHAGKCLRKRKLKVEKDMDILMALIDLKVVSRVLRMHDLSEEQLHWCEEKMSKVRIMEGKLQRDYSTPLFFPSH*

>Glyma05g35105.2   sequence type=predicted peptide   gene model=Glyma05g35105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLCPKEEALVKLFYNVSSPFQLLFLILFSSAVFLVTFLTFTGRFPLIQRDQEYEYVYTEDEEEEEEETQEGYSCVDSTDRLEVTCGKETRVFLHNEGHQRTHSYSEEFISPEESLNEESEEKHYSETLSLHNSAQVSDFENEEAETVQVDFPARDPDSAQVERRTTSPINLTAYKRNKNRDDDHVSVEIIKNKKVQETNLARDERFFVFASTQLQSKKLMIEERDDESSKWKSSIIGRDSDTEDAFSSSSRRSCPKWESYTLFQKYDEEMAILDRISAQKHHETESLRSIQMSPRSMSERIVYKFQNVNKKPAEVGHNPYRELEAAYVAQICLTWEALSWNYKNFRSKHASRQDHDTGCSATVAQQFQQFQVLLQRYIENEPYEHGRRPEIFARMRLLAPNLLLVPEYQDLEEDQKDGGFQCKISSASFLKIMEDGIKTFMNFLKNDKEKPCQILAACFRRNQRGTVDPALLRLMKKVNQKKRVKVKDLNHAGKCLRKRKLKVEKDMDILMALIDLKVVSRVLRMHDLSEEQLHWCEEKMSKVRIMEGKLQRDYSTPLFFPSH*

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