Report for Sequence Feature Glyma05g35060
Feature Type: gene_model
Chromosome: Gm05
Start: 39192338
stop: 39194267
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g35060
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G18400 AT
Annotation by Michelle Graham. TAIR10: BR enhanced expression 1 | chr1:6331464-6333576 FORWARD LENGTH=260
SoyBase E_val: 4.00E-57 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR12565 Panther
STEROL REGULATORY ELEMENT-BINDING PROTEIN
JGI ISS
PTHR12565:SF7 Panther
CENTROMERE-BINDING PROTEIN 1, CBP-1
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7KN12 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor BEE n=1 Tax=Medicago truncatula RepID=G7KN12_MEDTR
SoyBase E_val: 4.00E-98 ISS
UniRef100_I1K5R2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5R2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g35060
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g35060
Paralog Evidence Comments
Glyma08g04661 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g35060 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g234500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g35060
Coding sequences of Glyma05g35060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g35060.1 sequence type=CDS gene model=Glyma05g35060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGAATTCACTGCAGATTTGCAAAGTCTTAGATTTCCTTTCTTAGATATTGACAACATGGAAATGCAGAACTTGATGATGCCATTCTCCTGTGAAAGCTTCTTAGGTTCTCCAGAAGCTGAATTTGCAGGAAACTTGGAAGAGAATTTTCCTGATCACAATGAAGTTCCAGTTTTAGTTCCTATTATTAATTCAGTTAAAAATGAAATCCATGAAGGTCAAAAGAGGAAAGCAACTGATATATGGGAGCCAAGTTCTGCAAATTCAACTCCTGCTGTTTTTGAGAGTGGAAGCAAGACAAAAAATAGTTGTGGAAGAGGCAAGAGAGTAAAAAGGAATATGATAGAAGACAAGAAACCGAATGAAGTAGTTCATGTTAGAGCCAAACGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACAATGGGTATGGCAATAATGTTGGACGAGATAATAAACTATGTCCAGTCCTTGCAGCACCAAGTGGAGTTCCTCTCTATGAAGCTTAATGCAGCAAGTACCTATTATGACTTCAATTCAGAGTCAGATGTTTTGGAAACAATGCAGAGAGCAAGAGCATCCGAGGTGAAAGAGTTGGACAGGTATGTGAGAGAAGAATGTGAAGGAGTTTCTTGCTTTGAACCAACATGGTCATGGCCCCTGTGA
Predicted protein sequences of Glyma05g35060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g35060.1 sequence type=predicted peptide gene model=Glyma05g35060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEFTADLQSLRFPFLDIDNMEMQNLMMPFSCESFLGSPEAEFAGNLEENFPDHNEVPVLVPIINSVKNEIHEGQKRKATDIWEPSSANSTPAVFESGSKTKNSCGRGKRVKRNMIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLNAASTYYDFNSESDVLETMQRARASEVKELDRYVREECEGVSCFEPTWSWPL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
