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Report for Sequence Feature Glyma05g35021

Feature Type:gene_model
Chromosome:Gm05
Start:39167001
stop:39174018
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02760AT Annotation by Michelle Graham. TAIR10: Class II aaRS and biotin synthetases superfamily protein | chr3:597588-600650 REVERSE LENGTH=883 SoyBaseE_val: 0ISS
GO:0006418GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation SoyBaseN/AISS
GO:0006427GO-bp Annotation by Michelle Graham. GO Biological Process: histidyl-tRNA aminoacylation SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004812GO-mf Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity SoyBaseN/AISS
GO:0004821GO-mf Annotation by Michelle Graham. GO Molecular Function: histidine-tRNA ligase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG1936 KOG Histidyl-tRNA synthetase JGI ISS
PTHR11476Panther HISTIDYL-TRNA SYNTHETASE JGI ISS
PF00221PFAM Phenylalanine and histidine ammonia-lyase JGI ISS
PF00587PFAM tRNA synthetase class II core domain (G, H, P, S and T) JGI ISS
PF03129PFAM Anticodon binding domain JGI ISS
UniRef100_B9SHN6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9SHN6_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI00023389E6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023389E6 related cluster n=1 Tax=unknown RepID=UPI00023389E6 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g35021 not represented in the dataset

Glyma05g35021 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g04700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g234900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g35021.1   sequence type=CDS   gene model=Glyma05g35021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAGCTTCCGTAACGGTTGGAGGCAAGGCTTCTTCTCTCTCTTCCTCCTCCGTCTTCGCCGTCGCCACGGGCCTCGCTCACGTGCGGATCGACTCATCCGCGCTCGATAGACTCTCCAAGACCACCGCCACGGAAACGACGTCGTCTCAGCACCGCATCTGCGTCCCCGATTTCCTAACCCTAGAGGAATCCCGCGCCTTCCTTCTGGTCCTCCTCAACAACCTCGTCCTCTCCAATGCCCCCTCCCGCATTCCCCTCCTCCTATCCCAAACCCTCAATTCCAATCCTCCCACCTTCCAATTCCTAGATGCTGACGTCACCCAACCAGACCTTCTCACCTCTTCCACGCTGCTCGCTGTTTCCGCCATTCTCGACCGCCAGTCCGCCGCGCTCTCCGCCTTCGCCGACGTCGCCGCCGCCTTCTCCTGTGAGGCCTTGAAGGCCGATATAACGCCCTTCAATTTGATGGATTCCGGCGACGGACACGCCTCCAAGGCCGAGGTCGCCGTCGCCGCCGACATGCGGGTTCTGCTCAACGGATCCAAATCCGTCGGCAAGGAGAATATTCGATCCGTCGCGAGGGTTCCCAAGGTTCACGGGAGTGTGAGGGAGCAGGCCAAAGCCGTGCACTCGAGAATGCGTGTTGAGTTGAATTCGGGGGTTAAGGGTGTTGTTGTTGGGAGTGAGGAAGCTGTATGCACTGTGCTGTTGCCGTTGGCTGCAGCACTGAAAGAACTTGGTGAGTGTAGTTTCGCACGTGCCAAGAGTAATTCGGAGGTTATTGGTGGTGATGGTTTGAGATTGGGCATTGGGGAGGTGTTTGGGAAGGAATGCCCCACTCAGGATGGTTTGAGCAGTGGTTTAAATAAGGCTGTGAACTTGTTTCTGGGAAAGGAGTATGGTAAGTTTGCACACGAGGTCTTTGTGATGTTTGGACTTGTGTGGAAAGTTGTGGTGTGGGAAGCTGTGACGGCGGTTGCGGTGCTTGAGGCTGCTGAGTTGAATGATGTGATCCTAGGTGTCAAGGAAATGAAAGTAGAGGGGAACACGAAAGTAGAGGAGAAGAAGAAGAAGAAGAAAGTTGTTTTGGGGAAAGGGACTAGCTCGATTTTGGCATTGATCAAGGAGAGGTTACTGAGTGGTCGAGAGATAGCTTTAGGGACTTGGGTGGCAGATTTTCTATCACTTTTGGATTTGGCTAAACCTGAGTTTAATGAATTTTTATTGAAAGTAAAGGATGTTGTAGAGAGCAATGAAAGCAGGAGATTACCCAAGATTCCTAAGGGGACTCGTGATTTTGCTAAAGAACAAATGACAATTAGAAAGAAAGCTTTTCTAATAATAGAAGAAGTTTTTGAGAGGCATGGCGCAACTGCCTTAGATACTCCTGTTTTTGAATTGCGAGAAACTCTCATGGGAAAATATGGAGAAGATTCGAAGTTGATTTATGATCTTGCTGACCAGGGTGGGGAGCTTCTTTCTTTGAGGTATGACTTGACAGTTCCATTTGCTAGGTTTGTGGCTATGAATGGTCTGACATCTTTCAAAAGGTACCAAATAGCCAAGGTTTACAGAAGGGATAACCCATCTAAGGGAAGATACCGTGAATTTTATCAATGCGACTTTGATATTGCTGGTACTCCTACTCCATCTGAAATTATGGGTCCGGACTTTGAGGTTGTTAGGATTTTGACTGAACTACTTGATGAGCTGGACATTGGGGAATATGAGATAAAGTTGAATCATAGAAAGTTACTGGATAGCATGATGCAAATATGTGGTGTACCTCCTGAAAAGTTTAGAACAATATGTTCAAGCATTGACAAGTTAGACAAACAGTCTTTTCAACAGATAAGAAAAGAAATGGTGGAAGAAAAAGGATTAACTGCTGAGACAGCTGACAGAATTGAAACTTTTGTTAAAGAAAAAGGATCTCCTTTAGCATTATTATCTAAATTTAAACAAGAGGGTAGTGATTTCTCAAAACACAAAGGAGCTTCTGAAGCATTGAAAGAGCTGGAAATTTTATTTATAGCTCTGGAAAAATCAAAACGCATTGATAAAGTGGTTTTTGACTTGAGTCTTGCCAGAGGTCTGGATTATTACACTGGAGTTATATTTGAAGCTGTTTTTAAAGGAGGCACTCAGGTTGGTTCAATTGCTGCCGGTGGCCGATATGATAACCTTATAGGGATGTTTGGCTCAAGGTCAGTGCCTGCAGTTGGTGTAAGTCTGGGAATTGAGAGAGTATTTGCCATAATGGAGCAACAACAGAAGAATCTGAACCAGATGGCTCGTCCGACCAAGACAGAAGTCTTAGTGAGCATAGTGGGGAATGACTTTACACTTGCTGCAGAGCTAGCAGGAGAACTGTGGGATGCTAGGGTGAAAGCAGAATTCTTGGTCAATAAAAGAAGAGCGAAACACTTCGAATATGCAAAAGAATCAAGGATCCCTTGGATGGTACTTGTTTATGAGCAGGAAATAAAAGAAGGCGTGGTGCAATTGAAAAATCTCGAGGCCAACATCGATATTAAGATTTCTAGAGCAGAATTTGTGGAGGAACTTCGGAGACGGTTATACCCTTAA

>Glyma05g35021.1   sequence type=predicted peptide   gene model=Glyma05g35021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEASVTVGGKASSLSSSSVFAVATGLAHVRIDSSALDRLSKTTATETTSSQHRICVPDFLTLEESRAFLLVLLNNLVLSNAPSRIPLLLSQTLNSNPPTFQFLDADVTQPDLLTSSTLLAVSAILDRQSAALSAFADVAAAFSCEALKADITPFNLMDSGDGHASKAEVAVAADMRVLLNGSKSVGKENIRSVARVPKVHGSVREQAKAVHSRMRVELNSGVKGVVVGSEEAVCTVLLPLAAALKELGECSFARAKSNSEVIGGDGLRLGIGEVFGKECPTQDGLSSGLNKAVNLFLGKEYGKFAHEVFVMFGLVWKVVVWEAVTAVAVLEAAELNDVILGVKEMKVEGNTKVEEKKKKKKVVLGKGTSSILALIKERLLSGREIALGTWVADFLSLLDLAKPEFNEFLLKVKDVVESNESRRLPKIPKGTRDFAKEQMTIRKKAFLIIEEVFERHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELLSLRYDLTVPFARFVAMNGLTSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGTPTPSEIMGPDFEVVRILTELLDELDIGEYEIKLNHRKLLDSMMQICGVPPEKFRTICSSIDKLDKQSFQQIRKEMVEEKGLTAETADRIETFVKEKGSPLALLSKFKQEGSDFSKHKGASEALKELEILFIALEKSKRIDKVVFDLSLARGLDYYTGVIFEAVFKGGTQVGSIAAGGRYDNLIGMFGSRSVPAVGVSLGIERVFAIMEQQQKNLNQMARPTKTEVLVSIVGNDFTLAAELAGELWDARVKAEFLVNKRRAKHFEYAKESRIPWMVLVYEQEIKEGVVQLKNLEANIDIKISRAEFVEELRRRLYP*







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