Glyma05g34970 - SoyBase

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Report for Sequence Feature Glyma05g34970

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39134008
stop:	39137835
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01650	AT	Annotation by Michelle Graham. TAIR10: plant UBX domain-containing protein 2 \| chr2:284851-286394 REVERSE LENGTH=458	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019898	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2699	KOG	Predicted ubiquitin regulatory protein	JGI		ISS
PTHR23153	Panther	UBX-RELATED	JGI		ISS
PTHR23153:SF2	Panther	UBX-RELATED	JGI		ISS
PF00789	PFAM	UBX domain	JGI		ISS
PF09409	PFAM	PUB domain	JGI		ISS
UniRef100_G7LAI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UBX domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LAI2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5Q4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5Q4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34970

Paralog	Evidence	Comments
Glyma08g04760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g235400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34970

Limit To All Plant Sequences

>Glyma05g34970.1   sequence type=CDS   gene model=Glyma05g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACGTCAAAGGTAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCCTCTTCCTCATCCGGCAAATTCAAGGGCCAAGGTAGAGTCCTCGGTTCTTCTTCTTCTTCTTCTCCCACTAATTCCAATCCTACCCCTCGCCCCCACCCTAATTCGCAGAAACCCTCCTCTTCAGCCACACCCTATCCCAAACCCTCACCCCAGAAAACGGACCCATATAGAACCACCGAGAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCACAAAATGGGTACTCGCTGGACGTCTTTGAATGCCCTATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACATGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAGGTGATGATGGAAATGGGGCCTCAGAGAGTGATGGTGGGTCTAATACTAATAGTGATAGTGAATTTGAGGTTTGTGTTGAGACTTACAGTTCAGGGAAGCCATCTGAAGGATCGGTCGATGTTGTTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGCGAATGTGAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATAAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGATTTGAACTCCGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCCACAGAGGAGCAAATAAAAATCATTAAGAAAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCAAAGAGAGATGATTCGCCGTCTGCAACTTCTGCTGAGATGGGTCCAAAGGCTGAACCAAAGCTGGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGGGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAGCCTTTCAGCCGAAGAGGTCAATAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCAGATTCTCAGCTTTTAATCCCTAAGTCACTTAGAGAAAAACAAGCAAAAGCTTCCAGGAAGAGATACACTAAAGCTATTATCAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTGCTGCTATCTACAAGTTTGTCTGCTCGGCATTAAAAGAACCAGGCTTGGAATTTGAGCTAATGCATCCGGTACTTATCCAACGACGTGTGATCCCCCATTTTCCAAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATAAGTGAACCACTTGTAAATGGTTAA

Predicted protein sequences of Glyma05g34970

Limit To All Plant Sequences

>Glyma05g34970.1   sequence type=predicted peptide   gene model=Glyma05g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDVKGKVKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSSPTNSNPTPRPHPNSQKPSSSATPYPKPSPQKTDPYRTTEKPRKDDGFDPFDSLVTNSNRSQNGYSLDVFECPICKQPFRSEEEVSAHVDGCLNNPVERGGDDGNGASESDGGSNTNSDSEFEVCVETYSSGKPSEGSVDVVLKLLRNIGREPANVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEVPTEEQIKIIKKAIVLLESQLVQQGPPKRDDSPSATSAEMGPKAEPKLVDRQVKVFFAVPERVAAKIELPDSFYSLSAEEVNREAELRRKKIADSQLLIPKSLREKQAKASRKRYTKAIIRIQFPDGVVLQGVFAPWEPTAAIYKFVCSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG*

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