Report for Sequence Feature Glyma05g34920
Feature Type: gene_model
Chromosome: Gm05
Start: 39103662
stop: 39105632
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g34920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01620 AT
Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr2:278204-279226 FORWARD LENGTH=292
SoyBase E_val: 6.00E-67 ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PTHR23125 Panther
F-BOX/LEUCINE RICH REPEAT PROTEIN
JGI ISS
PTHR23125:SF169 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_G7LAI1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box protein SKIP28 n=1 Tax=Medicago truncatula RepID=G7LAI1_MEDTR
SoyBase E_val: 1.00E-163 ISS
UniRef100_I1K5P3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K5P3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g34920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g34920
Paralog Evidence Comments
Glyma08g04790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g34920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g235800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g34920
Coding sequences of Glyma05g34920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g34920.1 sequence type=CDS gene model=Glyma05g34920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGAGTCCTCCAAGGCGGTTGAGGTTGAGCAGGAAGCAAGTGAAGCAAAGGCTCCTCACGAGGCTTTGTTTCTTGTCTTGTCATATCTTCCTGTGTACGAGGTTGTGGTCATGTCTCAAGTCTGCACATCACTAAGGGATGCAGTGAACAATGACATATTACCATGGTTGAATGTTATTGTTCAAAGGCCCCTCAGTTGGCGACTCAACGATGAGATTCTAATCAAAATCACCTCAAAGGCCAATGGTAGGCTCAAAACTCTCGCTCTCATCAACTGCATGCACGTTACCGACCACGGCCTCCAAAGGGTCGTTCAACAAAATCCTCTCATTAACAAGTTGCATATACCAGCATGCACTGGCATAACCCCTGAAGGAGTTCTAGGAGCCGTGAAAACACTATGCCAAAGAAGCAATTGCTTAAAGACCTTAAGTATAAACGGCATCTACAACATACAGAAGGAGCATCTTGACATGCTTATCATGAACCTTGGAAAGAATCAACCACTAGAGGAGCAGCAAAAGCAGCAGCAGCCTGTCTACTATCATGAACGATGTAGCTTTTCAGTATTCAAGCAGGAAGAAAGCTGGCGGCTTATTGATTTGGAGATATGTCCCAGGTGCTTTGAGGTGAGGATGGTTTATGATTGCCCCAAAGAGCACTGCACGAGAAGGGAATGGCCCCTAGCTCCATGTAGGGGTTGCAATTTTTGTATTCCAAGGTGCGAAAACTGTGGTGGATGCATTGAATCCGGAGAAGTGGAAGAGGGAGCTTGTGAAGATATCTTCTGCCTTGAATGTTGGTTACAGCTTCCCAAGTGCAGTTTCTGCAACAAACCATATTGTAAGCAACACACAAACTGGTGGTGCACTTCTTCAGACTCTTCATTGATCTGTAAAGTTTGTGATGAAAATTCTCACGGATATACGTATACTGATGTTCTATAA
Predicted protein sequences of Glyma05g34920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g34920.1 sequence type=predicted peptide gene model=Glyma05g34920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEESSKAVEVEQEASEAKAPHEALFLVLSYLPVYEVVVMSQVCTSLRDAVNNDILPWLNVIVQRPLSWRLNDEILIKITSKANGRLKTLALINCMHVTDHGLQRVVQQNPLINKLHIPACTGITPEGVLGAVKTLCQRSNCLKTLSINGIYNIQKEHLDMLIMNLGKNQPLEEQQKQQQPVYYHERCSFSVFKQEESWRLIDLEICPRCFEVRMVYDCPKEHCTRREWPLAPCRGCNFCIPRCENCGGCIESGEVEEGACEDIFCLECWLQLPKCSFCNKPYCKQHTNWWCTSSDSSLICKVCDENSHGYTYTDVL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
