Glyma05g34850 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g34850

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39069533
stop:	39074330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70710	AT	Annotation by Michelle Graham. TAIR10: glycosyl hydrolase 9B1 \| chr1:26659356-26662962 REVERSE LENGTH=492	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0042547	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0008810	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulase activity	SoyBase	N/A	ISS
PTHR22298	Panther	ENDO-1,4-BETA-GLUCANASE	JGI		ISS
PF00759	PFAM	Glycosyl hydrolase family 9	JGI		ISS
UniRef100_G7LAH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endo-beta-1 4-glucanase n=1 Tax=Medicago truncatula RepID=G7LAH3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5N5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5N5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34850

Paralog	Evidence	Comments
Glyma08g04840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g236400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34850

Limit To All Plant Sequences

>Glyma05g34850.1   sequence type=CDS   gene model=Glyma05g34850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCAAACGCTCTCTTTCTCTTCTCTGTCCTCGCCATTCCCCTCCTCCTTCTGCCCTGCCCAACCGCCGCCGGCCACGACTACCGCGACGCCCTCCGCAAAAGCATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAGTGGACTTGAGCGGAGGGTACTACGACGCCGGGGACAACATAAAGTTCGGGTTTCCGATGGCGTTCTCGACGACAATGCTGTCGTGGAGCGTGATCGATTTCGAGAAGAGCATGGGGACGGAGCTAGGGAACGCGCTGAAGGCGGTGAGGTGGGGGACAGATTATTTGCTGAAGGCCACGGCCAAGATTGGCTCCGGCGTGGTGTTCGTGCAGGTTGGTGACCCTTACTCCGATCATAACTGCTGGGAGAGACCCGAAGACATGGACACGCTGCGCACCGTTTTCAAGATCGATGGGTCCCACCCTGGCTCTGACGTGGCTGGTGAAACTGCCGCTGCACTTGCCGCTGCCTCCATCGTCTTCAGATCACGTGACCCCTCCTACTCTACCATGCTCCTCAATCGAGCCGTTGCGGTGTTCCAGTTTGCTGACAAGCATCGTGGTGCATACAGTAACAGCCTGCACCGTGCAGTCTGCCCATTTTACTGCGACGTCAATGGTTACCAGGACGAGCTACTGTGGGCAGCAGCGTGGTTGCACAAGGCCTCACGTAGGCGTCAGTACAGAGAATACATTGTGAGGAACGAGGTGGTGTTGAGAGCTGGGGACACCATTAATGAGTTTGGTTGGGATAACAAGCATGCTGGGATTAATGTTCTCATTTCTAAGGAGGTGCTAATGGGAAGAGCAGAATATTTTGCGTCCTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTCAATATTCCCCAGGTGGGCTTATTTTCAAGGCCGGTGGAAGTAACATGCAGCATGTAACGTCCCTGTCTTTCCTGCTGCTAGCTTATTCTAACTACCTAAGCCACGCCAATAAGGTCGTGCCATGTGGCGAGACTACTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGGTGGATTACATTCTTGGGGACAACCCATTGGGAATGTCGTACATGGTTGGATATGGTGCACGCTACCCGCAGAGGATACACCACCGGGCCAGTTCGCTTCCCTCAGTGGCGGCCCACCCGGCCCATATTGGCTGTAAAGCTGGATCTCGGTATTACTTTAGCCCAAATCCCAACCCAAATGTGTTGCTTGGGGCCGTGGTGGGTGGGCCCACCAATAACACAGATTCCTTCCCTGATTCCAGGCCTTTCTTTCAGCAGTCTGAGCCCACTACATATATCAATGCCCCGCTGGTGGGCCTTCTCGCTTTCTTTTCAGCTCACTATTGA

Predicted protein sequences of Glyma05g34850

Limit To All Plant Sequences

>Glyma05g34850.1   sequence type=predicted peptide   gene model=Glyma05g34850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPNALFLFSVLAIPLLLLPCPTAAGHDYRDALRKSILFFEGQRSGKLPADQRLRWRHDSALHDGATAGVDLSGGYYDAGDNIKFGFPMAFSTTMLSWSVIDFEKSMGTELGNALKAVRWGTDYLLKATAKIGSGVVFVQVGDPYSDHNCWERPEDMDTLRTVFKIDGSHPGSDVAGETAAALAAASIVFRSRDPSYSTMLLNRAVAVFQFADKHRGAYSNSLHRAVCPFYCDVNGYQDELLWAAAWLHKASRRRQYREYIVRNEVVLRAGDTINEFGWDNKHAGINVLISKEVLMGRAEYFASFKQNADGFICSTLPGISHPQVQYSPGGLIFKAGGSNMQHVTSLSFLLLAYSNYLSHANKVVPCGETTATPALLKHLAKRQVDYILGDNPLGMSYMVGYGARYPQRIHHRASSLPSVAAHPAHIGCKAGSRYYFSPNPNPNVLLGAVVGGPTNNTDSFPDSRPFFQQSEPTTYINAPLVGLLAFFSAHY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain