Glyma05g34840 - SoyBase

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Report for Sequence Feature Glyma05g34840

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39061914
stop:	39067382
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13070	AT	Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain protein \| chr4:7621780-7623051 REVERSE LENGTH=343	SoyBase	E_val: 4.00E-127	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PF01985	PFAM	CRS1 / YhbY (CRM) domain	JGI		ISS
UniRef100_G7JMQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CRM domain-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7JMQ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K5N4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34840

Paralog	Evidence	Comments
Glyma08g04850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g236500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34840

Limit To All Plant Sequences

>Glyma05g34840.2   sequence type=CDS   gene model=Glyma05g34840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTCAGCTTTAATCAGAGGAACAAGGCGTGGGTTTTCCTGCACATTTAATAGAGATAGCTTATTCTGGTTATGCTGTCTAGTTGAACATGTTCCGACCATTGCATCATGCCCTACCACAACTTCATATTTCTGGTCTTTCACTCCAGATAAGTGCATATATCAAAGAACTTACAGAACGCCAAGCCATCTTTCAGGAGTTTCCTCCTTAGCTTCTCGATCAGGTTTTCTTTTAATGCAGAGATCAAATATCTTTGGAAGCCATGATATTCTGGGAAGCTGGCTCCCTGCCAGATACATAAGTAATGAATCAGTTGAGCTGAAGACTCACAATGATGTCATACGGTTCTCTCTAGGCAAGTCTGATGATATTAATAATGCAAAGAAGAGCCAGCTGAACAAAAAATTTAAAATGTCTAGAAAGGCTAAACTGAATGAGCTGAGGTTCTATCGTTTGAAGGCCAAGAAAAAGATGAATTCCCCAAATCCAGAAGTTAGAATTAGATATAAGCTTGAAAAGGCCAAGCGAAAGGAAACTTGGTTGATTGAGAAGCTACGGAAATTTGATGTACCCAAACCCCCTCCAGAAACATATGATCCTGAAATTTTAACTGAGGAGGAGAGGCATTACCTGAAGCGCACTGGTGAGAGAAAAAAACATTATGTTCCAGTTGGGAGACGAGGAGTGTTTGGTGGGGTAGTTCTTAATATGCATCTTCACTGGAAAAATCATGAAACGGTAAAGGTTATCTGCAAGCCTTGCAAACCAGGGCAAGTTCATGAATATGCTGAAGAGCTTGCTCGACTGAGCAAAGGCATTGTGATTGACATCAAGCCCAATAATACTATCATTTTTTACCGTGGAAAGAACTATGTAAAACCAGAAGTAATGTCACCTCCAAATACATTATCAAAAGCGAAGGCCTTGGAGAAATATAGGTATGAGCAGTCCCTTGAGCATACTAGCCAGTTCATTGAAAAGTTGGAGAAAGAGCTTGAAGAGTATCATCAACACCTTGCAAAGTTTAAAAAAGGGAAAGAGGATACTGCTAAAGATGGATTGGGGAAGCGTGACTCTATCTATGCTGGACACAAAATGTCACATACATGA

Predicted protein sequences of Glyma05g34840

Limit To All Plant Sequences

>Glyma05g34840.2   sequence type=predicted peptide   gene model=Glyma05g34840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSALIRGTRRGFSCTFNRDSLFWLCCLVEHVPTIASCPTTTSYFWSFTPDKCIYQRTYRTPSHLSGVSSLASRSGFLLMQRSNIFGSHDILGSWLPARYISNESVELKTHNDVIRFSLGKSDDINNAKKSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNTLSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKDGLGKRDSIYAGHKMSHT*

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