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Report for Sequence Feature Glyma05g34830

Feature Type:gene_model
Chromosome:Gm05
Start:39054297
stop:39055396
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g34830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14890AT Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:5137045-5137704 FORWARD LENGTH=219 SoyBaseE_val: 3.00E-70ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004857GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
GO:0046910GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity SoyBaseN/AISS
PTHR22931Panther PHOSPHOENOLPYRUVATE DIKINASE-RELATED JGI ISS
PTHR22931:SF14Panther INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY P JGI ISS
PF04043PFAM Plant invertase/pectin methylesterase inhibitor JGI ISS
UniRef100_G7I642UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase inhibitor n=1 Tax=Medicago truncatula RepID=G7I642_MEDTR SoyBaseE_val: 3.00E-101ISS
UniRef100_I1K5N3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5N3_SOYBN SoyBaseE_val: 5.00E-156ISS

Expression Patterns of Glyma05g34830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g34830 not represented in the dataset
Glyma05g34830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34830
ParalogEvidenceComments
Glyma08g04860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g236600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g34830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g34830
>Glyma05g34830.1   sequence type=CDS   gene model=Glyma05g34830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACCCAACGGCTTAACCATCTCCTTCTCTCCCTCTTCCTCTTCGCAGCCGCATTCTCCAGCCTCCACCCGACGGCCACCGCCGGAGACGAAGGCGCACCGTCTGCAGGCGACGGCGACCGCGACGCCGATTTCATCCGCACTAGCTGCAACACCACGCTCTACCCGGAAGTGTGTTTCACCTCCCTCTCTCGCTACGCCAATGCGGTGCAGCAGAACCCCGGCCATCTGGCGCGTGTGGCCATTGCCGTAAGTCTCTCGAAGGTTCACCGTGCGGCGTCCTACGTCTCCAACCTCACGCGCGACGCCGACTACGGCGGAAGCACGCGCGCCGCTCTTGCTCTGCACGACTGCTTCTCGAATCTGGGCGACGCCGTGGACGAAATCCGCGGCTCGCTGAAGCAGATGCGGCAGATTGGATCCGCCGGCGCCGGCGCGAGTTCGTTCCTGTTCCAGATGAGCAACGTGCAGACGTGGTTGAGTGCCGCACTCACCGACGAAGAGACCTGTACGGATGGATTCCAGGACGTAGCGGACTGTCCCATGAAAACGGGTGTATGCGATCGCGTCAGCAACGTCAAGAAGTTCACCAGCAATGCCTTGGCGCTCGTCAACTCCTACGCCAACAAGGGAATGCCTTGA
Predicted protein sequences of Glyma05g34830
>Glyma05g34830.1   sequence type=predicted peptide   gene model=Glyma05g34830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTQRLNHLLLSLFLFAAAFSSLHPTATAGDEGAPSAGDGDRDADFIRTSCNTTLYPEVCFTSLSRYANAVQQNPGHLARVAIAVSLSKVHRAASYVSNLTRDADYGGSTRAALALHDCFSNLGDAVDEIRGSLKQMRQIGSAGAGASSFLFQMSNVQTWLSAALTDEETCTDGFQDVADCPMKTGVCDRVSNVKKFTSNALALVNSYANKGMP*






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