Glyma05g34730 - SoyBase

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Report for Sequence Feature Glyma05g34730

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38954171
stop:	38965197
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18290	AT	Annotation by Michelle Graham. TAIR10: zinc finger protein-related \| chr3:6274308-6280174 FORWARD LENGTH=1254	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1940	KOG	Zn-finger protein	JGI		ISS
PTHR21319	Panther	RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1	JGI		ISS
PF01814	PFAM	Hemerythrin HHE cation binding domain	JGI		ISS
PF05495	PFAM	CHY zinc finger	JGI		ISS
UniRef100_G7KMZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7KMZ7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5M4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5M4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34730

Paralog	Evidence	Comments
Glyma08g04950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g237500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34730

Limit To All Plant Sequences

>Glyma05g34730.1   sequence type=CDS   gene model=Glyma05g34730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCCCGAATTCCGTCAACAAGGTTGACTCCTCCTCGGTTCTCAATGGCGGCTTGAAGTGCTCCAAACCGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCACAAAGCGATTCGGAATGAGCTTGACGCGCTGCACCGATTGGCCGTCGCATTCGCCACCGGCAACCGCTCCGACATTAAGCCGCTCTCCGGCCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTGCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTCGAGCACAAGGGTGAAAGCAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCCATCAATAATGTTGAAAGTTTTCCAAAAGAGTTGGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTTGAGGAACAGGCATCCTTAGTGTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCTGAATTTCTACCGTGGCTTTCAGCATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCAGAGGAAAAACTCCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGAAGAAGTAGCATTAACACAGTTGAAACTTGTGCAGATCATTCTCAAGTTCAATGTAGTTCTAGGGCATTAACCCATCAGCTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATGATAGATGTTTCTGATACCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAGTGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACTAGAAAGATACAGCACTCTGAAGATTTTACTAATCTATCTGCTTTTAACGAAAGATTTCAATTCATAGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGCGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCGTCTAATTCAGATGTTGAATTTTATTCCAAGTTATGCATACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGACGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTTGTCACACTCTTCTGTGGATGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGTTCGGCCATCCTGTGCTTGTGCATCTGCATTATCTAATAGACATTGCTCGGTATTAGCTGAATCAGGTGGGAACAAAAGATCAGTCAAGCGCAACATATTGGAGTCGCACAAAAATGAAGATCTACCTGAAACTTCAGAGACTGAAAATATTCAGAAACAATGTTGTAGTGCACGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGTAGTAACAATTTAGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGGTCCTTGTCTTTCTGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGCAATGTTGGATCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATGGTGATGAGACAATTCTTCGGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTAGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGTCCTTCATGAAGCCTTGCAGATGACGCATATGTCCGACAATTTAAGTGAAAGTAATTTTGGAACCTCTGATGCCAATACTAGTGATGATATCAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCTATAAGAGTGACCCTGGATCAGCATCTTTTTAGAGAAGAATGCGAACTGTGGCCATTGTTTGGCAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACGTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATATATGGAAGCAGGCAACTAAGAACACTATGTTCAACGAATGGCTTAGTGAATGCTGGAAAGAGAGTCGAGTGTCTACAGCACAGACAGAAACGTCAGATCACAGCACTTCTCGGAGAGGTGCTGAATATCAAGAAAGCTTGGACCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGCAAGGTATATCGAGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCTGCCCAGCAGAAATCACCTAAAGCTTTATCTGAAGGATCATCTAACAGTGTAGAAATAGAAGGACTCTCACCATCATTTCAGGACCCAGAGGAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGGGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCTATGGATAGAAAAGCAACATCAGAAATTATGTGTATGCGCTGCCTGAATATACAGCCAATAGGGCCCATATGCATGACACCTTCATGTAATGGGTTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGTGATGACCTGTTCACTTCAAGTGCCACAGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACTTGTAACCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAAGGACCGCTGTCAGGACATACTCTGCCATGACTGTAATCGGAAGGGCACTTCACGCTTCCACTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTTAG

Predicted protein sequences of Glyma05g34730

Limit To All Plant Sequences

>Glyma05g34730.1   sequence type=predicted peptide   gene model=Glyma05g34730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPLDGGGVAVLPNSVNKVDSSSVLNGGLKCSKPESPILIFLFFHKAIRNELDALHRLAVAFATGNRSDIKPLSGRYHFLSSMYRHHCNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSINNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSASISPDESQDLRNCLIKIVPEEKLLQKVVFTWMEGRSSINTVETCADHSQVQCSSRALTHQLEKVNCACESTTTGKRKHSGSMIDVSDTTGTHPIDEILLWHSAIKKELSEIAVETRKIQHSEDFTNLSAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIESIQSEGASSNSDVEFYSKLCIHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKTFQRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLSDIEENIVRPSCACASALSNRHCSVLAESGGNKRSVKRNILESHKNEDLPETSETENIQKQCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFCSSAPSLNSSLFIWETESSSCNVGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQMTHMSDNLSESNFGTSDANTSDDIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDIWKQATKNTMFNEWLSECWKESRVSTAQTETSDHSTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNSVEIEGLSPSFQDPEEHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEIMCMRCLNIQPIGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCNHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRCQDILCHDCNRKGTSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS*

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