Glyma05g34680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g34680): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g34680): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g34680

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38924564
stop:	38926844
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02560	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S7e family protein \| chr3:542341-543168 FORWARD LENGTH=191	SoyBase	E_val: 4.00E-111	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042274	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0030686	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 90S preribosome	SoyBase	N/A	ISS
GO:0032040	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small-subunit processome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3320	KOG	40S ribosomal protein S7	JGI		ISS
PTHR11278	Panther	40S RIBOSOMAL PROTEIN S7	JGI		ISS
PF01251	PFAM	Ribosomal protein S7e	JGI		ISS
UniRef100_G7KN51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S7-like protein n=1 Tax=Medicago truncatula RepID=G7KN51_MEDTR	SoyBase	E_val: 2.00E-126	ISS
UniRef100_I1K5L7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5L7_SOYBN	SoyBase	E_val: 4.00E-135	ISS

Expression Patterns of Glyma05g34680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g34680 not represented in the dataset	Glyma05g34680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34680

Paralog	Evidence	Comments
Glyma08g04990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g238000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34680

Limit To All Plant Sequences

>Glyma05g34680.5   sequence type=transcript   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTTCGTGCAGACATCATCTTATATTTGGGCTTAAAGCCCATAAATTACAGGTTGTTGGATTGCTCCATAAAAATATTGAGCCCAAAATTATATGCAAACAGAGATCTAAAATAAGGAAAGATTAAAATTTGCAACATGAACCGTCCACGTGTACACGAAGTCCGATCTTGGTCGTTCATTCAGTCCTTATAAACACGTTTAATCACAAACCCTAGGGTTTTCTTTTCACTGCGAACCAGTAGGGACTCCCATTCCGACTCTTAGCCGCCGATCTCTCAGGGCTTGCATCTTCTCAGGTAAGGTATGTGTGCTCTAGACCCATTTGCCCCTTCTATGCATTCTGCAAATCAATTATTGGAATCATTGAGTAACAGAAGGAAAGTTCTCATTTTTACTTTTTATGTTTTAATTGATTTACTTTTTCTAAGTTTTTCTGTTAGCCAACAAAACGTGTTAACCTTGAGGCGGGGTTGTTGTTGGGGGTTTGAAGACGGCTATTTTCATTTTTATTAGTTGGAGTTAGGGGGATTTAATCCTTTGGAAAATTGGAATTATTTAAGGAATGTTCAAATCGAGGCTTGACCCTTTTCTGTTCTCCTTAATTTTGTTTAGGGTTTAGGGGCTAGGCGCTCTAACATTATGTTGTTTTTGTACAGCTGTGAAGATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTATCTGGAAAAGATGTTGTGTTTGAGTATCCTGTCTCAGAGTCTTAGTTTCACTTTTGTTAGCTTTGAGAATTTGTTCGGAGAATTGCATATGGAGTATGCTGGTTAAAATTTTGGTGACAAATTGACTTTCAATCTGGAATTCGTTTTCTGATTTTTGGAAGTACTATTTCTGGTTTTTTCAATGTAGTATTTGAGCTTTATTTATTATAAAATTAAGTTTCTTTTATTTGCAAATTTCACAATTATTATATTTTTCTTGAATTAAATCTGTTGCATTCAGCTTACCAGAA

>Glyma05g34680.6   sequence type=transcript   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTTCGTGCAGACATCATCTTATATTTGGGCTTAAAGCCCATAAATTACAGGTTGTTGGATTGCTCCATAAAAATATTGAGCCCAAAATTATATGCAAACAGAGATCTAAAATAAGGAAAGATTAAAATTTGCAACATGAACCGTCCACGTGTACACGAAGTCCGATCTTGGTCGTTCATTCAGTCCTTATAAACACGTTTAATCACAAACCCTAGGGTTTTCTTTTCACTGCGAACCAGTAGGGACTCCCATTCCGACTCTTAGCCGCCGATCTCTCAGGGCTTGCATCTTCTCAGCTGTGAAGATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTATCTGGAAAAGATGTTGTGTTTGAGTATCCTGTCTCAGAGTCTTAGTTTCACTTTTGTTAGCTTTGAGAATTTGTTCGGAGAATTGCATATGGAGTATGCTGGTTAAAATTTTGGTGACAAATTGACTTTCAATCTGGAATTCGTTTTCTGATTTTTGGAAGTACTATTTCTGGTTTTTTCAATGTAGTATTTGAGCTTTATTTATTATAAAATTAAGTTTCTTTTATTTGCAAATTTCACAATTATTATATTTTTCTTGAATTAAATCTGTTGCATTCAGCTTACCAGAA

>Glyma05g34680.7   sequence type=transcript   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTTCGTGCAGACATCATCTTATATTTGGGCTTAAAGCCCATAAATTACAGGTTGTTGGATTGCTCCATAAAAATATTGAGCCCAAAATTATATGCAAACAGAGATCTAAAATAAGGAAAGATTAAAATTTGCAACATGAACCGTCCACGTGTACACGAAGTCCGATCTTGGTCGTTCATTCAGTCCTTATAAACACGTTTAATCACAAACCCTAGGGTTTTCTTTTCACTGCGAACCAGTAGGGACTCCCATTCCGACTCTTAGCCGCCGATCTCTCAGGGCTTGCATCTTCTCAGGTAAGCTGTGAAGATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTATCTGGAAAAGATGTTGTGTTTGAGTATCCTGTCTCAGAGTCTTAGTTTCACTTTTGTTAGCTTTGAGAATTTGTTCGGAGAATTGCATATGGAGTATGCTGGTTAAAATTTTGGTGACAAATTGACTTTCAATCTGGAATTCGTTTTCTGATTTTTGGAAGTACTATTTCTGGTTTTTTCAATGTAGTATTTGAGCTTTATTTATTATAAAATTAAGTTTCTTTTATTTGCAAATTTCACAATTATTATATTTTTCTTGAATTAAATCTGTTGCATTCAGCTTACCAGAA

Coding sequences of Glyma05g34680

Limit To All Plant Sequences

>Glyma05g34680.2   sequence type=CDS   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTAGAGCTATTATCACCATTTAACTCTTGTTACTTGTGTTATATGGTTGAGCATTTGTCTATGGAATTTCTTGACCTTTACCTTTGTATTAGTTTTTTTATGCCTACATAA

>Glyma05g34680.5   sequence type=CDS   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTATCTGGAAAAGATGTTGTGTTTGAGTATCCTGTCTCAGAGTCTTAG

>Glyma05g34680.6   sequence type=CDS   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTATCTGGAAAAGATGTTGTGTTTGAGTATCCTGTCTCAGAGTCTTAG

>Glyma05g34680.7   sequence type=CDS   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAACCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGATCTGAAGGATTTATACATAAACTCAGCCGTGCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTTTGAGGCCACCGAAGAAGGGTTCTGCTGCTCAGCGTCCTCGCAGCCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACCAAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGTTATCTGGAAAAGATGTTGTGTTTGAGTATCCTGTCTCAGAGTCTTAG

Predicted protein sequences of Glyma05g34680

Limit To All Plant Sequences

>Glyma05g34680.2   sequence type=predicted peptide   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYQIDGSKIMKVELLSPFNSCYLCYMVEHLSMEFLDLYLCISFFMPT*

>Glyma05g34680.5   sequence type=predicted peptide   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYQIDGSKIMKVYLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVSES*

>Glyma05g34680.6   sequence type=predicted peptide   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYQIDGSKIMKVYLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVSES*

>Glyma05g34680.7   sequence type=predicted peptide   gene model=Glyma05g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYQIDGSKIMKVYLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVSES*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain