Glyma05g34670 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g34670

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38918064
stop:	38919755
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01670	AT	Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 17 \| chr2:296889-297818 REVERSE LENGTH=182	SoyBase	E_val: 3.00E-79	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2839	KOG	Diadenosine and diphosphoinositol polyphosphate phosphohydrolase	JGI		ISS
PTHR12629	Panther	DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE	JGI		ISS
PF00293	PFAM	NUDIX domain	JGI		ISS
UniRef100_G7LAJ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7LAJ8_MEDTR	SoyBase	E_val: 3.00E-104	ISS
UniRef100_I1K5L3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K5L3_SOYBN	SoyBase	E_val: 4.00E-125	ISS

Expression Patterns of Glyma05g34670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34670

Paralog	Evidence	Comments
Glyma08g05000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g238100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34670

Limit To All Plant Sequences

>Glyma05g34670.2   sequence type=transcript   gene model=Glyma05g34670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTGTTTCCCTAATTTACTCGGTTATTATAATGTCCATCTCCGCAGTTGCATACCTTATAGATATAAAGAAGACATAGATGGTAAAATGAGCAACGAATTGGAAGTGCTAGTGGTTAGTTCACAGAAAGGTCGAGGATTGATGTTCCCAAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGTAGGGAATCCCTTGAAGAAGCAGGAGTATTGGGAATCATTGAGAGTGAACTAGGACAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATACATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATATTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATATAGCATTGGATGATTCTTTAAGTTTTTAAACAATTTAATCTAGGTAGGCCTAGGTCAGTTTGTCAATATTTTGTATCTTCATAAATTAAGAGTTGCTATAGAGAGGATTGATTAAGGGAGAGGAACAGAATTGTAGAGAAGGATGGAGTTGCAATTTTTATGCAATTCAAATTTACACGCTTATATATACAACTTACGAGTAGACTTCCAAGAGTTAAAATAATTTCGTTTTCAAGTCGTACGTTCTCCTTGTGTCTGTCTGTCTTATGGTTTATCAAACATATACTCCGAATTTTGTAAACACGATGCACTCGAGTGTGAATCCAGCAATGATCAATGAAGTAC

Coding sequences of Glyma05g34670

Limit To All Plant Sequences

>Glyma05g34670.1   sequence type=CDS   gene model=Glyma05g34670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGCTTGGTATCTCGCTCAGGAAGGGAATTGCAGAGGTACAACAACATGGGTGGCCGGCAAGTTGTTGGTTGCATACCTTATAGATATAAAGAAGACATAGATGGTAAAATGAGCAACGAATTGGAAGTGCTAGTGGTTAGTTCACAGAAAGGTCGAGGATTGATGTTCCCAAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGTAGGGAATCCCTTGAAGAAGCAGGAGTATTGGGAATCATTGAGAGTGAACTAGGACAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATACATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATATTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATATAGCATTGGATGATTCTTTAAGTTTTTAA

>Glyma05g34670.2   sequence type=CDS   gene model=Glyma05g34670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACGAATTGGAAGTGCTAGTGGTTAGTTCACAGAAAGGTCGAGGATTGATGTTCCCAAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGTAGGGAATCCCTTGAAGAAGCAGGAGTATTGGGAATCATTGAGAGTGAACTAGGACAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATACATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATATTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATATAGCATTGGATGATTCTTTAAGTTTTTAA

Predicted protein sequences of Glyma05g34670

Limit To All Plant Sequences

>Glyma05g34670.1   sequence type=predicted peptide   gene model=Glyma05g34670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACLVSRSGRELQRYNNMGGRQVVGCIPYRYKEDIDGKMSNELEVLVVSSQKGRGLMFPKGGWELDESVEEAACRESLEEAGVLGIIESELGQWNFISKRYGIYYEGHMFPMFVKEQLDTWPEKNLRRRIWMTVAEAREVCQHWWMKEALDILVQRIVSSQQRKEDIALDDSLSF*

>Glyma05g34670.2   sequence type=predicted peptide   gene model=Glyma05g34670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNELEVLVVSSQKGRGLMFPKGGWELDESVEEAACRESLEEAGVLGIIESELGQWNFISKRYGIYYEGHMFPMFVKEQLDTWPEKNLRRRIWMTVAEAREVCQHWWMKEALDILVQRIVSSQQRKEDIALDDSLSF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain