Glyma05g34580 - SoyBase

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Report for Sequence Feature Glyma05g34580

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38860363
stop:	38864310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68070	AT	Annotation by Michelle Graham. TAIR10: Zinc finger, C3HC4 type (RING finger) family protein \| chr1:25515412-25516767 REVERSE LENGTH=343	SoyBase	E_val: 4.00E-166	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11203	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	JGI		ISS
PTHR11203:SF27	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7LAL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase n=1 Tax=Medicago truncatula RepID=G7LAL6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5K4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5K4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34580

Paralog	Evidence	Comments
Glyma08g05080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g238900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34580

Limit To All Plant Sequences

>Glyma05g34580.1   sequence type=CDS   gene model=Glyma05g34580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCCCCAAACTCCGTCCCTCAGTCCCACGCGCCGCTCCTTCTCCCGCGCCCCGATGCCGCCGCCCGCCTCCCCATCCTAGCGCTCCTCCTCGGCCGCCGCGGCCACTCCGCCGTGGTCCGGGAGACGGCGGCGCGTGAGCTGGAGGAGCGCCGCGCCGACTGGACCTACTCGAAGCCGGTGGTGGCGCTCGACATAACGTGGAACATGGCATTCGTGCTGGTCTCGGCGGTGATGCTCGCCTGCACCGTCAAGGAGAACCCCAACACGCCGATCCGCTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTCGTCCACGTGGCCCTCGTGTGGCTCGAGTACCGCAGGAGGAACGACGCTCCCAGGGACGAGGAATCTGCTGCCAGCCTCCAATACGACGACGTCAACGATAGCGACGAGGACGATGTTGGAACCTCCGGGAGTTCCTCTTCCTCCGGATTCACAAAACGATGTGCGTCATTGAATACCATGATTTCATTACTTTGGTGGATGGTGGGCTTTTATTGGGTTGTCTCTGGTGGTGATATTCTGCTGCAAGATGCTCCACGTTTATACTGGTTGTCTGTTGTCTTTTTGGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGAATTGCCCTCTGTTGTTGTTTGCCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCAGATCTCAGTATACTTCCAAAATACAGATTTCAATTGTTAAGCAATGAGGAAACACCTGGTGAGGGAGGAGGATCAATGATTCCTATGGAGACCAGCAACGGTTATTCGGTGAATGAACGAACACTTTCACCAGAGGATGCAGAATGCTGTATATGCATCTCTTCTTATGAGGATGGAGCTGAACTTCATGTTCTTCCTTGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTATAATATTCTCAAGGGAAATGAACAGGTGTGA

Predicted protein sequences of Glyma05g34580

Limit To All Plant Sequences

>Glyma05g34580.1   sequence type=predicted peptide   gene model=Glyma05g34580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPNSVPQSHAPLLLPRPDAAARLPILALLLGRRGHSAVVRETAARELEERRADWTYSKPVVALDITWNMAFVLVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRNDAPRDEESAASLQYDDVNDSDEDDVGTSGSSSSSGFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSILPKYRFQLLSNEETPGEGGGSMIPMETSNGYSVNERTLSPEDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV*

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