Glyma05g34510 - SoyBase

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Report for Sequence Feature Glyma05g34510

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38819035
stop:	38821247
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12400	AT	Annotation by Michelle Graham. TAIR10: Nucleotide excision repair, TFIIH, subunit TTDA \| chr1:4222296-4222603 FORWARD LENGTH=71	SoyBase	E_val: 3.00E-33	ISS
GO:0006289	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG3451	KOG	Uncharacterized conserved protein	JGI		ISS
PF06331	PFAM	Transcription factor TFIIH complex subunit Tfb5	JGI		ISS
UniRef100_G7K0H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: General transcription factor IIH subunit n=1 Tax=Medicago truncatula RepID=G7K0H7_MEDTR	SoyBase	E_val: 3.00E-42	ISS
UniRef100_I1K5J5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5J5_SOYBN	SoyBase	E_val: 5.00E-82	ISS

Expression Patterns of Glyma05g34510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34510

Paralog	Evidence	Comments
Glyma08g05180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g239900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34510

Limit To All Plant Sequences

>Glyma05g34510.2   sequence type=transcript   gene model=Glyma05g34510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGCTTTCTGGGGAGTCAGGGCGGGGATGGAAAAACCCCGTCATCATGCCTACTTGAATAGCAGTGGCTCTGCTATTCAAGAGACACAGGCTTGTCAGAACCATTTGCACTGAAGGTTATACGACATGGTCAATGCCACTAAAGGGGTCTTTATTTCCTGTGACATACCTATGGCACAATATATCATCAACATGAATGCTTCATTGCCTGCATCTGACAAGTTCATTATACATATCTTGGATAATACCCATATGTTTGTTCAACCTCATGTTGAGCAAATGATACGAAGTCAAATTGCCAAGTTTAGAGAGGACAATACATATGTCAAGCCTAATTGATTACTATGGCCTTTCTGTCCTCCCCGAATGGCTACAGTGAATAACATTCTGGAACATTTTGTGTTGATTGGTAGTTGATCTTTACTAAGACCGTTTCTTTGTATACAAAGTTCTCGCAGTTCGCATGGAAAAATGAAATGTGATTTGCTATTAATTGTTTTCCCTTTCTGAAACGCAAAAGGGCAACACAGCCAAGCGACACTTAAAAACAGAGGGGTCTCAAAACGCAAAAGAGAAATATAGCTTACCACTATAAGATCCAAATAAAAGACAAGACAGATTGCCCTCAAATACTCT

Coding sequences of Glyma05g34510

Limit To All Plant Sequences

>Glyma05g34510.1   sequence type=CDS   gene model=Glyma05g34510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTAGAAAAAAACTTTGAATGCTTAGTTTGGCATGGCACAGAAAGTGAAAAATTTTTCCAATCCCATCATCCTCTCTGTCTCGCAGGGGACAGCCACCAAGAAAGGCAATTTACAGGAAGGTTATACGACATGGTCAATGCCACTAAAGGGGTCTTTATTTCCTGTGACATACCTATGGCACAATATATCATCAACATGAATGCTTCATTGCCTGCATCTGACAAGTTCATTATACATATCTTGGATAATACCCATATGTTTGTTCAACCTCATGTTGAGCAAATGATACGAAGTCAAATTGCCAAGTTTAGAGAGGACAATACATATGTCAAGCCTAATTGA

>Glyma05g34510.2   sequence type=CDS   gene model=Glyma05g34510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCAATGCCACTAAAGGGGTCTTTATTTCCTGTGACATACCTATGGCACAATATATCATCAACATGAATGCTTCATTGCCTGCATCTGACAAGTTCATTATACATATCTTGGATAATACCCATATGTTTGTTCAACCTCATGTTGAGCAAATGATACGAAGTCAAATTGCCAAGTTTAGAGAGGACAATACATATGTCAAGCCTAATTGA

Predicted protein sequences of Glyma05g34510

Limit To All Plant Sequences

>Glyma05g34510.1   sequence type=predicted peptide   gene model=Glyma05g34510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLEKNFECLVWHGTESEKFFQSHHPLCLAGDSHQERQFTGRLYDMVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSQIAKFREDNTYVKPN*

>Glyma05g34510.2   sequence type=predicted peptide   gene model=Glyma05g34510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSQIAKFREDNTYVKPN*

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