Glyma05g34490 - SoyBase

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Report for Sequence Feature Glyma05g34490

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38807671
stop:	38811065
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43350	AT	Annotation by Michelle Graham. TAIR10: glutathione peroxidase 3 \| chr2:18009195-18010533 REVERSE LENGTH=206	SoyBase	E_val: 1.00E-90	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0004602	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione peroxidase activity	SoyBase	N/A	ISS
KOG1651	KOG	Glutathione peroxidase	JGI		ISS
PTHR11592	Panther	GLUTATHIONE PEROXIDASE	JGI		ISS
PF00255	PFAM	Glutathione peroxidase	JGI		ISS
UniRef100_I1K5J0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=I1K5J0_SOYBN	SoyBase	E_val: 9.00E-145	ISS
UniRef100_I1K5J0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=I1K5J0_SOYBN	SoyBase	E_val: 9.00E-145	ISS

Expression Patterns of Glyma05g34490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34490

Paralog	Evidence	Comments
Glyma08g05200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g240100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34490

Limit To All Plant Sequences

>Glyma05g34490.2   sequence type=transcript   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTTCCTTGACGAAATGGCGTAAGAATTGATTGATTGATGGGAGCAGCGAACCATATATACAATTTAATTTGCGTTCACATGAGAACCGTCGTGACGTGCATTTTCTACATTGCAACACCGCGATATGAACGATGCAAAATAGTTTCAGATACGTCGCGTTGATTGATTGATATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGACATAGAGAAGCTTTTGCAATCTTGAATAGTAAGATTTGATTCTACATATCTAATGTGCTGAGGACATAGGGAATCTGTCCGGTGCCTTCGAAGGACAAGTAGCAATATGTATCATAAGTTAATATATGCCCTGAAAAGTTCTTAATGTATCTCGTGTATTTGGATTTTGGATTGCTCAATAAGTATAAATTGGTGTTCTCACTCTGTTACCAAAACCATAAAATAATAATATATTTGGATGCATCTTTATGTTATTATGCATGTCCATACTACGTGCGTGTTTGGAGCGTTTGTTAATTCTAAATCAACTTATTCTATAAAATTGATTTTAAAG

>Glyma05g34490.5   sequence type=transcript   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTTCCTTGACGAAATGGCGTAAGAATTGATTGATTGATGGGAGCAGCGAACCATATATACAATTTAATTTGCGTTCACATGAGAACCGTCGTGACGTGCATTTTCTACATTGCAACACCGCGATATGAACGATGCAAAATAGTTTCAGATACGTCGCGTTGATTGATTGATATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATAGAGAAGCTTTTGCAATCTTGAATAGTAAGATTTGATTCTACATATCTAATGTGCTGAGGACATAGGGAATCTGTCCGGTGCCTTCGAAGGACAAGTAGCAATATGTATCATAAGTTAATATATGCCCTGAAAAGTTCTTAATGTATCTCGTGTATTTGGATTTTGGATTGCTCAATAAGTATAAATTGGTGTTCTCACTCTGTTACCAAAACCATAAAATAATAATATATTTGGATGCATCTTTATGTTATTATGCATGTCCATACTACGTGCGTGTTTGGAGCGTTTGTTAATTCTAAATCAACTTATTCTATAAAATTGATTTTAAAG

>Glyma05g34490.6   sequence type=transcript   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTTCCTTGACGAAATGGCGTAAGAATTGATTGATTGATGGGAGCAGCGAACCATATATACAATTTAATTTGCGTTCACATGAGAACCGTCGTGACGTGCATTTTCTACATTGCAACACCGCGATATGAACGATGCAAAATAGTTTCAGATACGTCGCGTTGATTGATTGATATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATAGAGAAGCTTTTGCAATCTTGAATAGTAAGATTTGATTCTACATATCTAATGTGCTGAGGTTAGTACTTCAATCATTTAGTTTTCACCTCATCCTTTCTTCTGGATGAGTACTTGTGTGAGCTTGTACTAGTTATCTTGTAGATTCATTCTCAATCTTGCATATGCTAATGTACATTCATTTGTTAAAATGTCCAAAGTTCCAACAGTTTCACCTCTATTTATTGGAACATGCAACGAGCAAATCAATCTTTACTCCACATAAATAATTTGAATAGAGTTCATTACTTCAGTCGTTCAGAATATCTCATAGGTGTCATCAGTTTTCAATCAGTTTTTATGATTTAAATTGTGTAAGATATCATCATCTATATCAAAATACAAAACATGAAATCATAATATGATCTGTGATTCGCTAAATCAAATCAAAAGAGTTAGGATGGCCCACCGTAATCGACTGCACTGTGGTATATTTTAGGAAAAATTCTTAGGTTGGCATGGTCTATAAAGTACTTTCTGTGTTAAGAACATAAAATGACAAATGGTTTTACGTTTTTAAATTTGAGTCCCATCAAATTGGATTTTCTTATTGGTTTACTGCACAAAATTTAGTTACTAATCCAGCTAGCAAGTCTACCTTAGAATTCTTTCAGAAGGTTGTGATTGCCCTTAATCCACCCTTTATTTGAAAGTAATGCTCTTTCCCTATTTATGTATTTGGAACTTTTTTCCCCTTAATTGAAGTGTTTCCACGACAACTGTTAGTCTTAAGAAAGCTACATCAGCTTATGTTTTGTCCTTCTGTTCTTTTGTGCAGGACATAGGGAATCTGTCCGGTGCCTTCGAAGGACAAGTAGCAATATGTATCATAAGTTAATATATGCCCTGAAAAGTTCTTAATGTATCTCGTGTATTTGGATTTTGGATTGCTCAATAAGTATAAATTGGTGTTCTCACTCTGTTACCAAAACCATAAAATAATAATATATTTGGATGCATCTTTATGTTATTATGCATGTCCATACTACGTGCGTGTTTGGAGCGTTTGTTAATTCTAAATCAACTTATTCTATAAAATTGATTTTAAAG

Coding sequences of Glyma05g34490

Limit To All Plant Sequences

>Glyma05g34490.1   sequence type=CDS   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGGTTAGAGATATTATAGTGCTTATATATTTTAAGTAG

>Glyma05g34490.2   sequence type=CDS   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGACATAG

>Glyma05g34490.5   sequence type=CDS   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATAGAGAAGCTTTTGCAATCTTGA

>Glyma05g34490.6   sequence type=CDS   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATAGAGAAGCTTTTGCAATCTTGA

Predicted protein sequences of Glyma05g34490

Limit To All Plant Sequences

>Glyma05g34490.1   sequence type=predicted peptide   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEVRDIIVLIYFK*

>Glyma05g34490.2   sequence type=predicted peptide   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIET*

>Glyma05g34490.5   sequence type=predicted peptide   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEKDIEKLLQS*

>Glyma05g34490.6   sequence type=predicted peptide   gene model=Glyma05g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEKDIEKLLQS*

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