Glyma05g34470 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g34470

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38788313
stop:	38792975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23330	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:8347200-8349347 FORWARD LENGTH=715	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF133	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LBG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LBG4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A9C8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A9C8 related cluster n=1 Tax=unknown RepID=UPI000233A9C8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g34470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g240300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34470

Limit To All Plant Sequences

>Glyma05g34470.3   sequence type=transcript   gene model=Glyma05g34470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAATAATTAATGATACTATCATAAAATTATTGAAATATTTAATAGCAAAGTTTTTTGTTTTTCTTATGACAGAATGTAATAATAAAGTTAATTATGTCAGTATACGTAGTTAACCAAAAAATAGTCCAAAGTTTACATCAAGTAAAATTTTGGGGTGTACTTAATAGAGTGATCATGAGAGGCGGGGGAAGAGAGTGGAGATAAAAAGGAGGCGGAGGAAAGTCGCCGGCAAAAGCATCAATGAGTTCCAGCCAAAATGTGATGAGAAGCCTCCTCCGGAACCCCAACACGGTGGTTCCCACGTGCCACGTGAAACAGCTCCACGCCCAAATCGTGAAGACCACCAAAGCAACACCGCACTCCCTGGCTTGGATTTGCATCATCAAATGCTACGCCTCTCACGGCCTCCTCCGCCACTCCCTCGCCTCCTTCAACCTCTTGCGCTCTTTCGGCATCTCCCCCGATCGCCACTTGTTCCCTTCCCTCCTCAGAGCATCCACGCTTTTCAAACACTTCAATCTCGCTCAGTCCCTCCACGCCGCCGTCATTCGCCTCGGTTTCCACTTCGACTTGTACACCGCCAACGCTTTGATGAACATGTACTCCAAATTCCACCCTCATCTTTCCCCACTCCACGAATTTCCCCAAGCGCGCCATAACCATAATAATAAATACTCCGTGAAAATAGACAGCGTTAGAAAGTTGTTCGACAGAATGCCTGTGAGGGATGTTGTTTCGTGGAACACTGTTATTGCTGGGAATGCACAGAATGGGATGTACGAAGAGGCATTGAACATGGTTAAGGAAATGGGGAAGGAAAACTTGAGACCTGATTCCTTCACTTTGTCCAGCATTCTTCCTATTTTTACGGAGCACGCTAATGTTACCAAAGGAAAGGAAATTCATGGCTACGCCATTAGACACGGGTTTGATAAGGATGTTTTCATTGGAAGTAGCTTGATTGACATGTATGCCAAATGTACTCAAGTGGAGCTTTCGGTTTGTGCCTTTCACCTCTTGTCAAATCGAGACGCCATTTCGTGGAACTCCATCATTGCTGGCTGTGTGCAGAATGGGAGATTCGATCAAGGGCTCGGCTTCTTTCGTCGAATGTTGAAGGAAAAAGTGAAGCCAATGCAGGTCTCGTTCTCGAGTGTTATACCAGCTTGTGCTCACTTGACGGCCTTGAATTTGGGGAAGCAGCTTCATGCATACATAATTAGGCTTGGGTTTGATGATAACAAGTTTATAGCCAGCTCTCTGTTGGACATGTATGCCAAATGTGGGAACATTAAGATGGCTAGGTATATTTTCAACAAAATCGAGATGTGTGACCGTGACATGGTTTCTTGGACTGCCATCATTATGGGATGTGCAATGCACGGGCATGCCCTTGATGCAGTTTCCTTGTTTGAGGAGATGTTAGTTGATGGAGTGAAGCCCTGCTATGTGGCATTTATGGCTGTTTTAACTGCCTGTAGTCATGCTGGGTTGGTAGATGAAGGTTGGAAGTATTTTAACAGTATGCAACGGGATTTTGGTGTTGCTCCTGGCCTGGAGCACTATGCTGCTGTGGCGGACCTGCTTGGTAGAGCTGGAAGATTGGAGGAAGCATATGACTTTATTTCTAACATGGGAGAGGAACCAACAGGAAGTGTGTGGTCAACCTTGTTGGCTGCTTGTAGGGCTCATAAGAATATTGAATTGGCTGAAAAGGTTGTGAACAAGATACTTTTGGTTGACCCTGGAAACATGGGTGCACATGTTATAATGTCAAACATCTACTCAGCCGCCCAAAGATGGAGAGATGCTGCAAAATTGAGAGTCCGCATGAGGAAAACGGGCTTGAAGAAGACTCCAGCATGCAGCTGGATTGAGGTTGGAAACAAAGTACATACTTTTCTGGCTGGAGATAAATCACATCCATATTATGACAAAATAAACGAGGCGTTGAATATTTTGTTGGAACAGATGGAGAAAGAAGGTTATGTCCTTGACACAAATGAGGTGCTCCATGATGTTGATGAGGAACATAAACGCGACTTATTACGCACCCACAGTGAGAGACTTGCCATAGCATTTGGCATCATTAGCACTACATCTGGCACAACCATCCGTGTAATAAAGAACATTCGGGTGTGTGTGGACTGCCACACTGCAATTAAATTTATGGCAAAGATTGTTGGCAGGGAAATCATTGTGAGGGATAATAGCCGATTTCACCATTTTAAGAATGGGTCTTGTTCCTGTGGAGATTACTGGTGAAATAACTGGAAAGTGGAAACCAAGCATGTCAACATTGTAGCTGCATAAGCAGTACCGAACTGAGGTGGATTAAAATGCTACTAAATCAGTGTAAAAAGGACAGACTGTAATCAAGGTAAAAAAATGGGATGCAAAGTTGGCTGCCATGCCGTAGGAAAGTCATGCAGTCAAAATTGCTTTTGGAGATAAAGCCCATGTGCTCTCAGCTTGGTGAAGAGAGGGCTTGGGAGGTGGGATCCTGATTACACATTGTCCAATTTCATATTGCTGAAGGATGTCAATCTTTTCTGCCTGAGACAAGATAACATTCTCCAAATATCCTTTTTAATGTATTTTACAAGTTATTTAAGGAATTATTTATGCTTTTCCTTTTTTATGCTATGTTACATGAATGTCAGAAATTCCATGCTTATAATAAGAAAATTAAGGAAAACAGAATATTTAGATTATATAATTGCTCGTTGGCTCTTAATTAATTGGCAAAATAAGAAAAATAAGTTTTCTCTCTGTGACAATCTACAAGAGATAGCAGGATTCTGCTGAAGGAAATTAACATTCTATCAATTTGCATCACAGTTGAGAAATTCTGGAAAAAGGCTGCTTTTGATTGCTCTGTATTTGTTGTCAAGCAAAAAAATAGAAAAATGAAATTTTTTTAATCCTTATATCATTTTTTGTAGTTCTCGAGTGCATAGATTTTTTTTTTTAAATGTTATGTCCTTTGATGATTTGAGAGCATTTCCCTGATCTTTAGTCCTTAACGTTAGATCCAATATCCAGGTCTTGGTGGATCAGCAATCCCTCATTTGTCCGGTGAACTTGGAGGATGCAGATTTAAGAGTCAAGAGGTAAATCTTGGTGTTTAGATTGCATGAATACCTTCTCACAGTTCTTGGATCAATAATCTTATCAAAGAACTCTTCAAAAAAAAAAAAAATATCGTATCAAAGAAATTCCCTCATCATTTTAGGAATAAAAAGGGTAAGCCTAACGTACGAGGCTATAATCATTTGATGCCCTGTGGAGGGTCAAAAATTTCACAACTTTATTTCGGTGAATAGAGTGGTTGTTTCTGCAAGATTAAATTCAGTTTAGAGGGGATTTTAGGGCATATAATAAGCCAAGACTGGTTATCAGTCAGTTCTACAGAGCCACATAAATTTAATATCCATACAACGTGGTGTTGTATTTGAACCCCTTCATATTCACGAGAAAGTCCAATTTCTCGTTGTCCTATTCTGTATGATGGCATCCTGTTAATGCTTTTCCAAAATGCTCATGGTTTAGCTGGGTCTTCGTATATGGATGCTGCCAGTGCCAGCTCTTTGCTGATTCATTCTTTATCAAGCTGTTTGTGGAATGGTATCCTGTCTCGTGATATATTGGTTGCTCTGGGTTATGGTCTAAATCCATTTTTTTTTTCCTAACTCTATGGTGCTCACTTGTGGTTGTGCACTGCTACGAATATCTAATGTGGAGGTAGGCCAACCTCTGCACATTTAGCTGAACAAAGGTGTAACAGCGTGATGTTTCTTGTTCTGTTCTGCTCGACCATTCTTTTGGTTGAACTTGATTCTCCCTGCTGAAAAGAGATAATTTCCGTCTTTCACCTTGAACCAAATACTTGTCTCTTAATTCAAAACTGCTACATGCCACCTCCAGAAACTTGGCTTAGATAGTGAATGATTACTTTTTGTAACTATTCTTATTCCTTGTTACAACTGAGTTGTTTTACAAACTGGACTAATCTTTCAGGTTCCATCTCTAAAGGGCACGACAGCATAATAATATATTAATATGATGAATATCTTTT

Coding sequences of Glyma05g34470

Limit To All Plant Sequences

>Glyma05g34470.2   sequence type=CDS   gene model=Glyma05g34470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCAGCCAAAATGTGATGAGAAGCCTCCTCCGGAACCCCAACACGGTGGTTCCCACGTGCCACGTGAAACAGCTCCACGCCCAAATCGTGAAGACCACCAAAGCAACACCGCACTCCCTGGCTTGGATTTGCATCATCAAATGCTACGCCTCTCACGGCCTCCTCCGCCACTCCCTCGCCTCCTTCAACCTCTTGCGCTCTTTCGGCATCTCCCCCGATCGCCACTTGTTCCCTTCCCTCCTCAGAGCATCCACGCTTTTCAAACACTTCAATCTCGCTCAGTCCCTCCACGCCGCCGTCATTCGCCTCGGTTTCCACTTCGACTTGTACACCGCCAACGCTTTGATGAACATGTACTCCAAATTCCACCCTCATCTTTCCCCACTCCACGAATTTCCCCAAGCGCGCCATAACCATAATAATAAATACTCCGTGAAAATAGACAGCGTTAGAAAGTTGTTCGACAGAATGCCTGTGAGGGATGTTGTTTCGTGGAACACTGTTATTGCTGGGAATGCACAGAATGGGATGTACGAAGAGGCATTGAACATGGTTAAGGAAATGGGGAAGGAAAACTTGAGACCTGATTCCTTCACTTTGTCCAGCATTCTTCCTATTTTTACGGAGCACGCTAATGTTACCAAAGGAAAGGAAATTCATGGCTACGCCATTAGACACGGGTTTGATAAGGATGTTTTCATTGGAAGTAGCTTGATTGACATGTATGCCAAATGTACTCAAGTGGAGCTTTCGGTTTGTGCCTTTCACCTCTTGTCAAATCGAGACGCCATTTCGTGGAACTCCATCATTGCTGGCTGTGTGCAGAATGGGAGATTCGATCAAGGGCTCGGCTTCTTTCGTCGAATGTTGAAGGAAAAAGTGAAGCCAATGCAGGTCTCGTTCTCGAGTGTTATACCAGCTTGTGCTCACTTGACGGCCTTGAATTTGGGGAAGCAGCTTCATGCATACATAATTAGGCTTGGGTTTGATGATAACAAGTTTATAGCCAGCTCTCTGTTGGACATGTATGCCAAATGTGGGAACATTAAGATGGCTAGGTATATTTTCAACAAAATCGAGATGTGTGACCGTGACATGGTTTCTTGGACTGCCATCATTATGGGATGTGCAATGCACGGGCATGCCCTTGATGCAGTTTCCTTGTTTGAGGAGATGTTAGTTGATGGAGTGAAGCCCTGCTATGTGGCATTTATGGCTGTTTTAACTGCCTGTAGTCATGCTGGGTTGGTAGATGAAGGTTGGAAGTATTTTAACAGTATGCAACGGGATTTTGGTGTTGCTCCTGGCCTGGAGCACTATGCTGCTGTGGCGGACCTGCTTGGTAGAGCTGGAAGATTGGAGGAAGCATATGACTTTATTTCTAACATGGGAGAGGAACCAACAGGAAGTGTGTGGTCAACCTTGTTGGCTGCTTGTAGGGCTCATAAGAATATTGAATTGGCTGAAAAGGTTGTGAACAAGATACTTTTGGTTGACCCTGGAAACATGGGTGCACATGTTATAATGTCAAACATCTACTCAGCCGCCCAAAGATGGAGAGATGCTGCAAAATTGAGAGTCCGCATGAGGAAAACGGGCTTGAAGAAGACTCCAGCATGCAGCTGGATTGAGGTTGGAAACAAAGTACATACTTTTCTGGCTGGAGATAAATCACATCCATATTATGACAAAATAAACGAGGCGTTGAATATTTTGTTGGAACAGATGGAGAAAGAAGGTTATGTCCTTGACACAAATGAGGTGCTCCATGATGTTGATGAGGAACATAAACGCGACTTATTACGCACCCACAGTGAGAGACTTGCCATAGCATTTGGCATCATTAGCACTACATCTGGCACAACCATCCGTGTAATAAAGAACATTCGGGTGTGTGTGGACTGCCACACTGCAATTAAATTTATGGCAAAGATTGTTGGCAGGGAAATCATTGTGAGGGATAATAGCCGATTTCACCATTTTAAGAATGGGTCTTGTTCCTGTGGAGATTACTGGTGA

>Glyma05g34470.3   sequence type=CDS   gene model=Glyma05g34470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCAGCCAAAATGTGATGAGAAGCCTCCTCCGGAACCCCAACACGGTGGTTCCCACGTGCCACGTGAAACAGCTCCACGCCCAAATCGTGAAGACCACCAAAGCAACACCGCACTCCCTGGCTTGGATTTGCATCATCAAATGCTACGCCTCTCACGGCCTCCTCCGCCACTCCCTCGCCTCCTTCAACCTCTTGCGCTCTTTCGGCATCTCCCCCGATCGCCACTTGTTCCCTTCCCTCCTCAGAGCATCCACGCTTTTCAAACACTTCAATCTCGCTCAGTCCCTCCACGCCGCCGTCATTCGCCTCGGTTTCCACTTCGACTTGTACACCGCCAACGCTTTGATGAACATGTACTCCAAATTCCACCCTCATCTTTCCCCACTCCACGAATTTCCCCAAGCGCGCCATAACCATAATAATAAATACTCCGTGAAAATAGACAGCGTTAGAAAGTTGTTCGACAGAATGCCTGTGAGGGATGTTGTTTCGTGGAACACTGTTATTGCTGGGAATGCACAGAATGGGATGTACGAAGAGGCATTGAACATGGTTAAGGAAATGGGGAAGGAAAACTTGAGACCTGATTCCTTCACTTTGTCCAGCATTCTTCCTATTTTTACGGAGCACGCTAATGTTACCAAAGGAAAGGAAATTCATGGCTACGCCATTAGACACGGGTTTGATAAGGATGTTTTCATTGGAAGTAGCTTGATTGACATGTATGCCAAATGTACTCAAGTGGAGCTTTCGGTTTGTGCCTTTCACCTCTTGTCAAATCGAGACGCCATTTCGTGGAACTCCATCATTGCTGGCTGTGTGCAGAATGGGAGATTCGATCAAGGGCTCGGCTTCTTTCGTCGAATGTTGAAGGAAAAAGTGAAGCCAATGCAGGTCTCGTTCTCGAGTGTTATACCAGCTTGTGCTCACTTGACGGCCTTGAATTTGGGGAAGCAGCTTCATGCATACATAATTAGGCTTGGGTTTGATGATAACAAGTTTATAGCCAGCTCTCTGTTGGACATGTATGCCAAATGTGGGAACATTAAGATGGCTAGGTATATTTTCAACAAAATCGAGATGTGTGACCGTGACATGGTTTCTTGGACTGCCATCATTATGGGATGTGCAATGCACGGGCATGCCCTTGATGCAGTTTCCTTGTTTGAGGAGATGTTAGTTGATGGAGTGAAGCCCTGCTATGTGGCATTTATGGCTGTTTTAACTGCCTGTAGTCATGCTGGGTTGGTAGATGAAGGTTGGAAGTATTTTAACAGTATGCAACGGGATTTTGGTGTTGCTCCTGGCCTGGAGCACTATGCTGCTGTGGCGGACCTGCTTGGTAGAGCTGGAAGATTGGAGGAAGCATATGACTTTATTTCTAACATGGGAGAGGAACCAACAGGAAGTGTGTGGTCAACCTTGTTGGCTGCTTGTAGGGCTCATAAGAATATTGAATTGGCTGAAAAGGTTGTGAACAAGATACTTTTGGTTGACCCTGGAAACATGGGTGCACATGTTATAATGTCAAACATCTACTCAGCCGCCCAAAGATGGAGAGATGCTGCAAAATTGAGAGTCCGCATGAGGAAAACGGGCTTGAAGAAGACTCCAGCATGCAGCTGGATTGAGGTTGGAAACAAAGTACATACTTTTCTGGCTGGAGATAAATCACATCCATATTATGACAAAATAAACGAGGCGTTGAATATTTTGTTGGAACAGATGGAGAAAGAAGGTTATGTCCTTGACACAAATGAGGTGCTCCATGATGTTGATGAGGAACATAAACGCGACTTATTACGCACCCACAGTGAGAGACTTGCCATAGCATTTGGCATCATTAGCACTACATCTGGCACAACCATCCGTGTAATAAAGAACATTCGGGTGTGTGTGGACTGCCACACTGCAATTAAATTTATGGCAAAGATTGTTGGCAGGGAAATCATTGTGAGGGATAATAGCCGATTTCACCATTTTAAGAATGGGTCTTGTTCCTGTGGAGATTACTGGTGA

Predicted protein sequences of Glyma05g34470

Limit To All Plant Sequences

>Glyma05g34470.2   sequence type=predicted peptide   gene model=Glyma05g34470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSQNVMRSLLRNPNTVVPTCHVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW*

>Glyma05g34470.3   sequence type=predicted peptide   gene model=Glyma05g34470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSQNVMRSLLRNPNTVVPTCHVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW*

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