Glyma05g34400 - SoyBase

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Report for Sequence Feature Glyma05g34400

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38759657
stop:	38765500
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16020	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1712) \| chr1:5498633-5501018 FORWARD LENGTH=515	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2622	KOG	Putative myrosinase precursor	JGI		ISS
PTHR13056	Panther	UNCHARACTERIZED	JGI		ISS
PF08217	PFAM	Fungal domain of unknown function (DUF1712)	JGI		ISS
UniRef100_I1K5I0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5I0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9S9N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T24D18.12 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S9N3_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34400

Paralog	Evidence	Comments
Glyma08g05260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g240900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34400

Limit To All Plant Sequences

>Glyma05g34400.2   sequence type=transcript   gene model=Glyma05g34400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACAAACTATCAAATAATAATGTATGTGGTGTTTAGTTGACTGGTAAGTAAGGGAAGGTAGAAATTGAGGAGATTGAATTGCAATAGCAATGAGTGTGTCTTCAAATTCGAAGGAATCGATGGAATTATGCATATTTGATTTGCGGAGAGGCCAACACGAAGGCCAAGAGCTCGATAAGATTCTCTTCTTCTTCCCCGCCGGTTTGCCCTTTTCAAAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTAAGAAAAGTTCTCAAGGAAATTCACTCACTTTTTGTCATGTTTCATGGATCTATTAGAGCAATGCTGGAGAAAGAACCCGGCGGAGGACTAACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGAGGGCATGTAAAAAGCGGTCTCCGTGGGATACTTGCTGCTGTGGTAATGATTTTCTTGCGGGGAAAAAGCTCCTTTTACCTTCATTCCGTGATTGCTTAAAGGAACGTGGAACTGTTCAGATGCTGACAATAGGTCGCGAGGCTGCAATTGAGGTTCAGTCCCTTGTCAGGGTGCTTGAATCTTCTTCTGGAAACACTCCCTGCTACTCTTTGGTTTTATTTCAAGACCTGCTAGTGTCCACAAGTCTATCTCCTGATGACACCATAAATTTATTCACATATGCTGTGCTAAGGTTGACTCCCCATGCTCTATCTTCTGGAACAAGTTCCTGGTCCTACTTACGGAAAGGAAGTTCTGCATCCAATGTTGCCACTGAGTCTAACATGGCCCATCCAAGCTCTTTGTCTGAAAGTTTTTATGGCTCATCTGATATATCCTCTGGTGAAGATAACCACTATCATGTTGTGAGGCCCTTACAGAGTGACAAATGGTCTAAAGGAAAAGATGGTTATCTTGTCACTGATTTATGGGGTGCAGAAGTTGGTACGTGGGTGTTTGCCTCTCCAACAGTTTGGCTTCAACATACAGGAGAGAAAATGTATCTTTGTGTTTATCAGCATAGAAGCCTTACTTTGATGCTTCTGATTCCTGTATCATCCATTCCTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTGGAGATAATGCTTATCACGTTAGTGGGTACCGCTACTTACTTGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGACTTAGAGGTGTGCATTAGAGCAAAAAATAATGCATGGGTTATTTCTCGAGTCACAAGAGGGAAGGAGCTTTACATGGTTCTAGAGAAAGCTAATGAAACCCTTCTATATGCTTCAGATGCTGTTGAGAAGTTTAGCGACAGGTATTGCAATGGAACATTTTCTCTGGACTAAAGAAAACCAAGCATGTGCGACCGAGAGGAATAGCACGCTAGGTCTTCTAACTGTTTACCCAGTAAAGTCGGGAAGTTTTCCACTGTTGATTTTTCTCACCGGGAAATTCAAGAATGGAAGAAAGAATGCTACTCTGTGTATATCTCTCTGTATATTAAGTGTAATTTGTTTATACTTGTTAAAGGGTGCTTTATCAAATCTTGTCACCGGTAACTTTCTTTTTAATCCGAAATTGGGTCAGTTCCGAGAGAAATTGTTTTCCAAAAAGTTTCATTTATTTGACAATAGACTTTGAATTCCTAAAACTTAATACTAAGTCTACTTCGATCTTTAAAGCC

Coding sequences of Glyma05g34400

Limit To All Plant Sequences

>Glyma05g34400.1   sequence type=CDS   gene model=Glyma05g34400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGTGTCTTCAAATTCGAAGGAATCGATGGAATTATGCATATTTGATTTGCGGAGAGGCCAACACGAAGGCCAAGAGCTCGATAAGATTCTCTTCTTCTTCCCCGCCGGTTTGCCCTTTTCAAAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTAAGAAAAGTTCTCAAGGAAATTCACTCACTTTTTGTCATGTTTCATGGATCTATTAGAGCAATGCTGGAGAAAGAACCCGGCGGAGGACTAACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGAGGGATTTTCTTGCGGGGAAAAAGCTCCTTTTACCTTCATTCCGTGATTGCTTAAAGGAACGTGGAACTGTTCAGATGCTGACAATAGGTCGCGAGGCTGCAATTGAGGTTCAGTCCCTTGTCAGGGTGCTTGAATCTTCTTCTGGAAACACTCCCTGCTACTCTTTGGTTTTATTTCAAGACCTGCTAGTGTCCACAAGTCTATCTCCTGATGACACCATAAATTTATTCACATATGCTGTGCTAAGGTTGACTCCCCATGCTCTATCTTCTGGAACAAGTTCCTGGTCCTACTTACGGAAAGGAAGTTCTGCATCCAATGTTGCCACTGAGTCTAACATGGCCCATCCAAGCTCTTTGTCTGAAAGTTTTTATGGCTCATCTGATATATCCTCTGGTGAAGATAACCACTATCATGTTGTGAGGCCCTTACAGAGTGACAAATGGTCTAAAGGAAAAGATGGTTATCTTGTCACTGATTTATGGGGTGCAGAAGTTGGTACGTGGGTGTTTGCCTCTCCAACAGTTTGGCTTCAACATACAGGAGAGAAAATGTATCTTTGTGTTTATCAGCATAGAAGCCTTACTTTGATGCTTCTGATTCCTGTATCATCCATTCCTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTGGAGATAATGCTTATCACGTTAGTGGGTACCGCTACTTACTTGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGACTTAGAGGTGTGCATTAGAGCAAAAAATAATGCATGGGTTATTTCTCGAGTCACAAGAGGGAAGGAGCTTTACATGGTTCTAGAGAAAGCTAATGAAACCCTTCTATATGCTTCAGATGCTGTTGAGAAGTTTAGCGACAGGTATTGCAATGGAACATTTTCTCTGGACTAA

>Glyma05g34400.2   sequence type=CDS   gene model=Glyma05g34400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGTGTCTTCAAATTCGAAGGAATCGATGGAATTATGCATATTTGATTTGCGGAGAGGCCAACACGAAGGCCAAGAGCTCGATAAGATTCTCTTCTTCTTCCCCGCCGGTTTGCCCTTTTCAAAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTAAGAAAAGTTCTCAAGGAAATTCACTCACTTTTTGTCATGTTTCATGGATCTATTAGAGCAATGCTGGAGAAAGAACCCGGCGGAGGACTAACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGAGGGCATGTAAAAAGCGGTCTCCGTGGGATACTTGCTGCTGTGGTAATGATTTTCTTGCGGGGAAAAAGCTCCTTTTACCTTCATTCCGTGATTGCTTAAAGGAACGTGGAACTGTTCAGATGCTGACAATAGGTCGCGAGGCTGCAATTGAGGTTCAGTCCCTTGTCAGGGTGCTTGAATCTTCTTCTGGAAACACTCCCTGCTACTCTTTGGTTTTATTTCAAGACCTGCTAGTGTCCACAAGTCTATCTCCTGATGACACCATAAATTTATTCACATATGCTGTGCTAAGGTTGACTCCCCATGCTCTATCTTCTGGAACAAGTTCCTGGTCCTACTTACGGAAAGGAAGTTCTGCATCCAATGTTGCCACTGAGTCTAACATGGCCCATCCAAGCTCTTTGTCTGAAAGTTTTTATGGCTCATCTGATATATCCTCTGGTGAAGATAACCACTATCATGTTGTGAGGCCCTTACAGAGTGACAAATGGTCTAAAGGAAAAGATGGTTATCTTGTCACTGATTTATGGGGTGCAGAAGTTGGTACGTGGGTGTTTGCCTCTCCAACAGTTTGGCTTCAACATACAGGAGAGAAAATGTATCTTTGTGTTTATCAGCATAGAAGCCTTACTTTGATGCTTCTGATTCCTGTATCATCCATTCCTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTGGAGATAATGCTTATCACGTTAGTGGGTACCGCTACTTACTTGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGACTTAGAGGTGTGCATTAGAGCAAAAAATAATGCATGGGTTATTTCTCGAGTCACAAGAGGGAAGGAGCTTTACATGGTTCTAGAGAAAGCTAATGAAACCCTTCTATATGCTTCAGATGCTGTTGAGAAGTTTAGCGACAGGTATTGCAATGGAACATTTTCTCTGGACTAA

Predicted protein sequences of Glyma05g34400

Limit To All Plant Sequences

>Glyma05g34400.1   sequence type=predicted peptide   gene model=Glyma05g34400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSSNSKESMELCIFDLRRGQHEGQELDKILFFFPAGLPFSKQLSVIGLSEGLITFTRIFSPEAACDVIEAERHSHVFYEAEPDIWIVMVADKSNDSEPIWRVDALRKVLKEIHSLFVMFHGSIRAMLEKEPGGGLTRRHLYTFIMDYLRDFLAGKKLLLPSFRDCLKERGTVQMLTIGREAAIEVQSLVRVLESSSGNTPCYSLVLFQDLLVSTSLSPDDTINLFTYAVLRLTPHALSSGTSSWSYLRKGSSASNVATESNMAHPSSLSESFYGSSDISSGEDNHYHVVRPLQSDKWSKGKDGYLVTDLWGAEVGTWVFASPTVWLQHTGEKMYLCVYQHRSLTLMLLIPVSSIPNGEQGVSAVRQQVVENASLKILKVEEKLSKGWGGDNAYHVSGYRYLLVDGDRNVSRASPATKVTTLTKESLLAMNKLRQEVELEKSRAKLDSRNCEKDLEVCIRAKNNAWVISRVTRGKELYMVLEKANETLLYASDAVEKFSDRYCNGTFSLD*

>Glyma05g34400.2   sequence type=predicted peptide   gene model=Glyma05g34400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSSNSKESMELCIFDLRRGQHEGQELDKILFFFPAGLPFSKQLSVIGLSEGLITFTRIFSPEAACDVIEAERHSHVFYEAEPDIWIVMVADKSNDSEPIWRVDALRKVLKEIHSLFVMFHGSIRAMLEKEPGGGLTRRHLYTFIMDYLRACKKRSPWDTCCCGNDFLAGKKLLLPSFRDCLKERGTVQMLTIGREAAIEVQSLVRVLESSSGNTPCYSLVLFQDLLVSTSLSPDDTINLFTYAVLRLTPHALSSGTSSWSYLRKGSSASNVATESNMAHPSSLSESFYGSSDISSGEDNHYHVVRPLQSDKWSKGKDGYLVTDLWGAEVGTWVFASPTVWLQHTGEKMYLCVYQHRSLTLMLLIPVSSIPNGEQGVSAVRQQVVENASLKILKVEEKLSKGWGGDNAYHVSGYRYLLVDGDRNVSRASPATKVTTLTKESLLAMNKLRQEVELEKSRAKLDSRNCEKDLEVCIRAKNNAWVISRVTRGKELYMVLEKANETLLYASDAVEKFSDRYCNGTFSLD*

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