Glyma05g34370 - SoyBase

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Report for Sequence Feature Glyma05g34370

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38744032
stop:	38746289
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01818	AT	Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein \| chr2:353552-355370 REVERSE LENGTH=222	SoyBase	E_val: 5.00E-42	ISS
PF04640	PFAM	PLATZ transcription factor	JGI		ISS
UniRef100_D7LPW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPW1_ARALL	SoyBase	E_val: 2.00E-40	ISS
UniRef100_I1K5H9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5H9_SOYBN	SoyBase	E_val: 9.00E-179	ISS

Expression Patterns of Glyma05g34370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34370

Paralog	Evidence	Comments
Glyma08g05270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g241000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34370

Limit To All Plant Sequences

>Glyma05g34370.1   sequence type=CDS   gene model=Glyma05g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGGCAGAATCTTTCCCCAAAGGAAAGGAGTAGAGATTGGATTGGAGTTCTTATGAACAGCAGCTTTGGTTATTGTACTTATCACCATGATCTTCGATCTAATGAGATGAATGTGTTCTGCGTGGACTGTGCACTTAGGATGTGTAGGCACTGTAAGGAAGCTCATTCCCTACATAGAAGGTTTCAGATTTACAAATATTCCTACCAGGATGTCTTCCGCCATGCCGAGCTGCAGAAGTATTTTGATTGCTCCAAAATTCAGACTTACATATCCAATAATGAAAGGATTGTGCATCTCAAACCTCGGCCTTCAATCACCAAATCTAAGTCTGCTGATCTAAGTCCCGACTCTAAATACAAAGAGACCGGCATAGCAACAAGACCAAAGTCAGGGGGCACGTGTGAAGAATGTGGAAAACACTTACAAGATGAGCGTAATCGCTTCTGCTCCATTACATGCAAGATCTCAGTGCATCCAGTGGAGACCCAATACCAAGGTCAAAATCAATGTTCACCAAACCACCAAAGTGCTAGAGGCATCATCAATCCAAAACCTGAAGGCATTGACTTTACAATGAATGATAACCATAATTCAGAACCGGAGTCATCTATCTCTGAAGCTGAGCCATATGGGTGGGTTGAAGTTGTGAATTTCAGAAAGCGTCCAAGGAAAAGTATCCCTCAGAGGCCTGTCTTTGTTTTCACGTCTTAG

Predicted protein sequences of Glyma05g34370

Limit To All Plant Sequences

>Glyma05g34370.1   sequence type=predicted peptide   gene model=Glyma05g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGQNLSPKERSRDWIGVLMNSSFGYCTYHHDLRSNEMNVFCVDCALRMCRHCKEAHSLHRRFQIYKYSYQDVFRHAELQKYFDCSKIQTYISNNERIVHLKPRPSITKSKSADLSPDSKYKETGIATRPKSGGTCEECGKHLQDERNRFCSITCKISVHPVETQYQGQNQCSPNHQSARGIINPKPEGIDFTMNDNHNSEPESSISEAEPYGWVEVVNFRKRPRKSIPQRPVFVFTS*

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