Glyma05g34330 - SoyBase

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Report for Sequence Feature Glyma05g34330

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38709143
stop:	38728569
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24706	AT	Annotation by Michelle Graham. TAIR10: THO2 \| chr1:8742210-8755243 FORWARD LENGTH=1804	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1874	KOG	KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4	JGI		ISS
PTHR21597	Panther	THO2 PROTEIN	JGI		ISS
PF11262	PFAM	Transcription factor/nuclear export subunit protein 2	JGI		ISS
PF11732	PFAM	Transcription- and export-related complex subunit	JGI		ISS
UniRef100_B9SNG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tho2 protein, putative n=1 Tax=Ricinus communis RepID=B9SNG7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K5H3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5H3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34330

Paralog	Evidence	Comments
Glyma08g05320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g241400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34330

Limit To All Plant Sequences

>Glyma05g34330.1   sequence type=CDS   gene model=Glyma05g34330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTCCACCCATAGAGTGTGCATACGTAACGGAAGAGTGTATTCGGGAATGGAGGAGTGGCAACCCTGCCCTCAAGGTTTCCCAACCTGTTCCAATGCTTCGCTTTCTCTACGAGCTCTGCTGGACCATGGTTCGGGGAGAATTGCCCTTTCAGAAGTGTAAAGTAGCATTAGATTCTGTTATATTTTCAGATAAAGCTTCCAATGAGAAAATAGCTTCAAATTTTTCTGATATAGTGACCCAGATGGCTCAAGATCATACAATGTCAGGAGAGTTCCGTTCTCGTCTCATCAAACTGGCAAGATGGCTTGTGGAATCTGAAATGGTTCCAGTTAGGCTACTTCAAGAACGTTGTGAGGAAGAATTTTTGGGGGAGGTTGAGTTGATCAAAATTAAGGCTCAGGAGTTGAAGGTTAAAGAGGTCAGAGTTAATACCCGACTTCTCTATCAGCAAACCAAATTCAACCTTCTCAGGGAAGAGAGTGAGGGCTATGCAAAGCTGGTTACTCTTCTTTGTCGGGACTCTGAAGCACCTACTCAAAAATCATCTGCAGCAACAATTGGCATTATTAAGTCATTAATTGGCCATTTTGATTTGGATCCAAATCGTGTTTTTGATATTGTTCTTGAGTGTTTTGAACTGCAGCCTGATGATGATGTGTTTATAGAATTGATTCCTATTTTTCCAAAGTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGGATGGAAGTCAACGGTCCTGTTCCATTTGGGCTCTATAGACTGACAGCCTTGCTGGTGAAGCAAGATTTTATTGATCTTGATAGCATATATGCTCATCTACTTCCCAGGGATGATGAGGCATTTGAGCATTACAATACTTTCTCTTCCAAGCGCCTTGATGAGGCTAATAAAATTGGAAGAATAAACCTTGCTGCAATTGGAAAAGATCTAATGGATGATGAGAAACAGGGGGATGTCACTATAGATCTCTTTGCTGCTATAGACATGGAAACAGATGCGGTTGAAGAGCGGACAACTGAGCTTCAGAGCAGTCAGACTTTGGGCTTGCTTACTGGCTTTCTTTCAGTGGATGACTGGTATCATGCACATCTACTCTTTGAACGTCTTTCACCACTCAATGCAGTGGAACATATTCAAATATGTGACAGTTTGTTCAGGCTTATCAAGAAGTCAATTTCTTCAGCATATGATGTTATTCGTCAGACACATCTTCAAAATCCTGGATTGTCCACAGGAGGCAGCACTGATGTTATGGATGTAGATAACTCTTCAGGATTCAGTTCTTTCATAGATCTTCCAAAGGAACTTTTTCAGATGCTTGCTTGTACTGGACCTTATCTCTACCGTGATACTGTACTGTTGCAGAAGGTTTGTAGGGTGTTGAGAGGTTATTACCTTTCTGCTCTTGAGCTTGTAAGTCATGGAAATGGTGTCTTGAATCCTCAATTACAAGTTCCTGGAAATCTTCACCTACATCTTAAGGAGGCAAGGCTAAGGGTGGAGGATGCTTTAGGAGCATGTCTACTACCTTCTCTGCAGTTAATTCCTGCCAATCCAGCCGTTGGCCAGGAAATTTGGGAACTAATGAGCCTTCTTCCTTATGAGGTGCGATATCGTTTGTATGGTGAATGGGAAAAAGATGATGAGCGCATTCCTATGCTTTTAGCTGCAAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAACGGCTGGCAAAGGAAAATTTGAAGCAGCTGGGCCGGATGGTTGCAAAATTAGCTCATGCCAACCCTATGACTGTCCTTCGAACAATTGTTCATCAGATTGAGGCTTATAGAGACATGATTACTCCTGTAGTGGATGCATTTAAGTACTTAACTCAGCTTGAGTATGATATATTGGAATATGTTGTGATTGAGCGCTTGGTGCTTGGCGGACGTGATAAGTTAAAGGATGATGGCCTTAATTTGTCTGATTGGCTTCAATCTCTTGCTTCATTTTGGGGCCACCTGTGTAAGAAGTACCCATCAATGGAATTACGGGGCCTTTTCCAGTATCTTGTGAATCAGTTAAAGAAGGGGCAGGGAATTGAGCTTGTTCTACTGCAGGAGCTTATTCAACAAATGGCTAATGTCCAGTACACGGAGAACTTGACTGAGGAACAGTTGGATGCAATGGCTGGGAGTGAGACTCTCAGATATCAAGCAACATCTTTTGGTGTAACTCGGAATAATAAGGCATTGATAAAGTCAACTAGCAGACTTCGAGATGCATTACTTCCAAATGATGAACCGAAGTTGGCGATCCCCCTGTTACAGCTTATTGCTCAACATTGTTCTTTGGTTGTCATCAATGCAGATGCACCCTACATTAAAATGGTTAGTGAGCAATTTGATAGATGTCATGGAACTCTCCTTCAATATGTGGAGTTTCTTTGCAGTGCAGTCACTCCAGCATCAAATTATGCCATTCTTGTTCCCTCCCTCAATGACCTGGTTCACCTTTACCACCTAGACCCTGAGGTTGCTTTCTTGATATATCGCCCTGTAATGAGGCTTTTCAAGTCTCCGAGGAACCCTGATGTTTGCTGGCCCTTGGGTGATAAAGATGCTGCAAGTGATGCATCTACAAACTTTGAGTCTGATCCTTTGGATCATTCTGCTAGTATGGTTCTAAATCTTGGCTCTGATCAAAATCCTATAAGTTGGTCGTATCTTCTTGATACTGTTAAAACCATGTTGCCTTCAAAAGCATGGAATAGCTTATCTCCTGATCTTTATGCTACGTTTTGGGGTCTTACATTATATGATCTGTATGTTCCAAAAAATCGTTATGAGTCAGAAATAGCCAAATTGCATGCTAATCTTAAATCTTTGGAGGAGCTTTCTGACAATTCAAGCTCAGCAATCGCGAAGAGGAAGAAAGAAAAGGAAAGAATTCAAGAATCTCTTGATCGTCTGATCAGTGAACTGCATAAACATGAAGAGAATGTTGCATCTGTTCGTAGACGGCTTTCTCATGAAAAAGACAAATGGTTAAGTTCCTGTCCTGACACCTTAAAGATCAACATGGAGTTTCTTCAGCGTTGTATATTTCCACGCTGTACTTTTAGTATGCCAGATGCAGTTTATTGTGCTATGTTCGTACACACACTCCATTCCCTTGGAACCCCCTTTTTTAACACAGTCAATCACATAGATGTTCTTATTTGTAAGACCCTACAGCCAATGATATGCTGCTGCACTGAATACGAGGCAGGCAGGCTTGGCAGGTTTCTGTATGAGACTTTGAAGATTGCATACTATTGGAAGAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCATTAAGGTACACTGGAAGTGGAGTCAAAGAATCACTCGTTTACTAATTCAGTGTCTTGAATCTACCGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCTGTTACTCGGAAGAGTGGGATCAACCTTGAAAAGCGGGTAGCTAAGATTAAAAGTGATGAAAGGGAGGATCTTAAGGTGTTGGCAACTGGTGTTGCAGCAGCATTGGCTGCTAGGAAGCCTTCTTGGGTTACCGATGAAGAATTTGGTATGGGTTATCTTGAGTTGAAACCTTCACCATCTATGACTAAATCTTCAGCTGGAAACTCCGCAACTGTACAAAGTGGGATAAATCTCAATGTTTCACAAACTGAATCTGTCAGTGGAAAACATGTGGACTCCGGAAACACAGTCAAAGATCAGGCAATAAGAACAAAAACTGTAGATGGCAAGTCCGAGAGAATTGAAAGCATTACAGTGACAAAATCTGATGCTGGCCACATTAAACTCAAGAGTAGTTCAATGGTGAATGGATTGGATGCTCAATCATCCATGGCCCCGTCTTCTGTACAATCTGGGATGCCAAAATCTATGGAAAACCCAAAGCAAGTGGAAGAATCCATAAATAGAGCATCAGATGAACATGGGACAAGAAGTACTGAGTTAAGAACTTCAGCAAAACGTTCAGTTCCTGCTAGTTCACTTGCAAAGCCCTCAAAACAAGATCCTGTAAAAGAGGATGGTAGATCTGGAAAACCTGTTGCTAGAACTTCTGGTTCCTTGAGCAGCGACAAGGATCTACAAACCCATGCATTGGAGGGAAGACACACTGGAACTACCAATGTACCTTCTTCAAATGGTAACACCATTTCAGGTTCTACAAAAGGTTCAAATCCACCAGTCAAGATTTCATTGGATGGTCCTGGTAATGAATCCAAGGCAGAGGTTGGAGTTGCCAAGTCTTCTGATATTAGGGCTTCTATGGTGAAGGATGATGGAAATGATATTACTGACAATCCAAGAGGATCCTCCTCTCGCATAGTTCATTCCCCTAGGCATGAAAACACAGTAGTTACTTCAAAGTCTAATGATAGAGTTCAGAAGAGAGCTAGTTCTGTTGAAGAACCTGACAGACTAGGTAAACGACGGAAAGGGGATGTGGAGCTAAGAGATTTTGAAACTGAACTCAGATTCTCTGAAAGAGAGAAGATGATGGATCCTCGATTTGCTGATGACAAATTGGGACCAGAGGAACATGGTCTGTACAGGGCAAGTGATAAGCCATTGGAAAGGACAAAAGACAAAGGCAACGAAAGATATGAAAGGGATCACAGGGAAAGAATGGACCGTCTGGATAAGTCTCGTGGTGATGACTTTGTTGCAGAAAAACCTAGGGATAGGTCAATTGAAAGATATGGAAGAGAACGATCTGTTGAGAGAATGCAAGAGAGGGGTAGTGATAGGAGTTTTAATAGACTCCCTGAGAAAGCCAAGGATGAAAGAAACAAGGATGATAGAAATAAATTACGATACAATGATGCATCAGCAGAAAAATCTCATGGTGATGATCGCTTCCATGGGCAAAGCTTGCCTCCACCTCCCCCTTTACCTCCTAATGTGGTTCCTCAATCTGTAGGAGCTGGTAGGCGTGATGAAGATGTTGATAGAAGGTATGGAGCTACAAGGCACTCTCAAAGACTTTCTCCAAGGCATGAAGAAAAAGAACGGAGATGGTCTGAAGAGACTGTGGTTTCTCAGGATGATGCCAAACGCCGAAAAGAAGACGATTTTCGAGATCGAAAACGTGAGGAAATTAAGGTGGAAGAGAGGGAGCGGGAAAGAGAGAAAGCAAACATTCTAAAGGAAGAGTTGGACTTAAATGCCGCATCCAAGAGACGTAAACTCAAGAGGGAGCATTTACCAACTGATGAACCTGGCGAGTACTCTGCAGTGGCCCATCCACCTTCTTCCGCTGGTACTGGCATGCCGCTGGCATATGATGGAAGGGACAGAGGAGACAGAAAGGGACCCATCATGCAGCATCCAAGTTACATAGATGAATCAAGTCTCAGGATTCACGGTAAAGAGGCGGCCAGCAAGTTGAATCGCCGTGATTCAGATCCCTTGTATGACCGTGAATGGGAGGATGAGAAGAGACAAAGAGCTGATCAGAAGCGAAGGCACCGGAAGTAA

Predicted protein sequences of Glyma05g34330

Limit To All Plant Sequences

>Glyma05g34330.1   sequence type=predicted peptide   gene model=Glyma05g34330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLPPIECAYVTEECIREWRSGNPALKVSQPVPMLRFLYELCWTMVRGELPFQKCKVALDSVIFSDKASNEKIASNFSDIVTQMAQDHTMSGEFRSRLIKLARWLVESEMVPVRLLQERCEEEFLGEVELIKIKAQELKVKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAPTQKSSAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILGFKFQYYQRMEVNGPVPFGLYRLTALLVKQDFIDLDSIYAHLLPRDDEAFEHYNTFSSKRLDEANKIGRINLAAIGKDLMDDEKQGDVTIDLFAAIDMETDAVEERTTELQSSQTLGLLTGFLSVDDWYHAHLLFERLSPLNAVEHIQICDSLFRLIKKSISSAYDVIRQTHLQNPGLSTGGSTDVMDVDNSSGFSSFIDLPKELFQMLACTGPYLYRDTVLLQKVCRVLRGYYLSALELVSHGNGVLNPQLQVPGNLHLHLKEARLRVEDALGACLLPSLQLIPANPAVGQEIWELMSLLPYEVRYRLYGEWEKDDERIPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVLGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTSRLRDALLPNDEPKLAIPLLQLIAQHCSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASNYAILVPSLNDLVHLYHLDPEVAFLIYRPVMRLFKSPRNPDVCWPLGDKDAASDASTNFESDPLDHSASMVLNLGSDQNPISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKSLEELSDNSSSAIAKRKKEKERIQESLDRLISELHKHEENVASVRRRLSHEKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPSPSMTKSSAGNSATVQSGINLNVSQTESVSGKHVDSGNTVKDQAIRTKTVDGKSERIESITVTKSDAGHIKLKSSSMVNGLDAQSSMAPSSVQSGMPKSMENPKQVEESINRASDEHGTRSTELRTSAKRSVPASSLAKPSKQDPVKEDGRSGKPVARTSGSLSSDKDLQTHALEGRHTGTTNVPSSNGNTISGSTKGSNPPVKISLDGPGNESKAEVGVAKSSDIRASMVKDDGNDITDNPRGSSSRIVHSPRHENTVVTSKSNDRVQKRASSVEEPDRLGKRRKGDVELRDFETELRFSEREKMMDPRFADDKLGPEEHGLYRASDKPLERTKDKGNERYERDHRERMDRLDKSRGDDFVAEKPRDRSIERYGRERSVERMQERGSDRSFNRLPEKAKDERNKDDRNKLRYNDASAEKSHGDDRFHGQSLPPPPPLPPNVVPQSVGAGRRDEDVDRRYGATRHSQRLSPRHEEKERRWSEETVVSQDDAKRRKEDDFRDRKREEIKVEEREREREKANILKEELDLNAASKRRKLKREHLPTDEPGEYSAVAHPPSSAGTGMPLAYDGRDRGDRKGPIMQHPSYIDESSLRIHGKEAASKLNRRDSDPLYDREWEDEKRQRADQKRRHRK*

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