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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73740 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr1:27734451-27736008 FORWARD LENGTH=431 | SoyBase | E_val: 4.00E-123 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0030259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid glycosylation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| PTHR21015 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR21015:SF22 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03033 | PFAM | Glycosyltransferase family 28 N-terminal domain | JGI | ISS | |
| PF04101 | PFAM | Glycosyltransferase family 28 C-terminal domain | JGI | ISS | |
| UniRef100_B9SFW3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative n=1 Tax=Ricinus communis RepID=B9SFW3_RICCO | SoyBase | E_val: 8.00E-156 | ISS |
| UniRef100_I1K5G7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K5G7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g34250 not represented in the dataset |
Glyma05g34250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g05420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g242000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g34250.3 sequence type=transcript gene model=Glyma05g34250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGATTTCATTTAATTTATTCTCTAGTAAACTGTTACATACATATTGAATAAAAAGTCTTTTTTTTAGTAAGAACTTGTTTTCTTTCGCTGGTGGTTGAAACTTTCCAAGTAACTCATAATAACTGCCAGAAATCAGAGTTGAGCTTGAGCAAGCACATGCGTTAATGTTAATGGCAACCACCCTTTCCTTCTCCTTTCCCGTGTTCCAAAGCACTCCACTATCCAGAAGAGTCTCAATCTCATGCCACTCATCCAACTCCAACAACGAGACTCTCCGCGTGGCCTTCGCCGGCGGCGGCACCGGCAGCAACGTGTACCCGGCGGTGGCCATCGCGGAGGAGCTGAAAACCGCCAACCCCACGTGCCAGTTTCTCTTCCTCTGCACCCCCGACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTTCTCTTCTTCCCTCACCGTCTCTTCAAGTCTCTGATCCAATGCCTCTGCCACCTCCGACACTTCCAACCCGACGTTGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCCTCGCTGCCAAGCTCAGAGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCCGGCTTCGCCAACTCTCTTCTTTCCTTCTTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTTTCGTGTGTGGGAACCCGGTGAGGTTGTCTATTAGGAACCTCGTTTCCAAGGTGACCGCCATGTCTCATTTTTTCCCCGGTTCGGATAGTGGGAGCAGGATTTTGTTGGTGCTTGCGGGATCTTTTGGCGCCAATGCAGTTAACATTGCGATGCTGAATTTGTATTATCAGATGCTGAGACAGGATAGTGGCTTGTATGTTATTTGGCAAACTGGGGTTGAAGCCTTTGATGAAATGGATAGTCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGGTTTGGCATATGCAGCAGCAGACTTGATTGTCTCCAGAGCAGGTGCAATGACTTGCTATGAAATATTGGCAACAGGGAAACCATCTATCCTGAATTTGTGGATGGATGCGGAAATCGTATTCTTCTTCACAACAGTGCTGGGTATTTATTTGGACATGAACCATATACCATCCCCTCAACTAGTATAACGATACCCTCGCCAAATTTCTCTGAGGGGAATCAGTTCAGAAATGCTTCCTTGATGGCAGATTTAGCTGGTGTGACTGTTATAACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTTTAAGGGACAAGAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAGGCTGCAAACCCCAATGCCTCAGCAGAGATTGCAAAACACATTCTCTCCCTTGTAAATCTATCTACCAAAGAGAAAAGAAATACGGCAACAAAGTAGAATCCTAGCAACTAGCATTTCATGGTGGTTGAAATAAATTCATGCTTACAACTGTAAGCTTTGCTTGTGGGCCAACAACACCGATAGAAATTTCAAGAAGAAAGTTGCACTGCTCTTACAACTTGATAGCATATTGCTAGGAATGTGATATATGATAATGATAATGCTGAGAAGTATGCGAGCTCAGCTCATATATCACTGGCATTCAAATGAGTAAGAGACCAAGGATTGAGACTTTAATTGCTCATGCAGGGATATGATATGACATGAGAGTTGTCTACTTTTTATTTATTTAATTTTGTGAACCATTATGCATGGAGTGGTCTATTTTTTGTGGTTCACATCGAGACATCCTCGTCACTAACAAAGTGCCAAGATGAGTTTGTGTTTTCATGACTGCCCATGTCGATAATATTTGGGAATAAGGAAATGAGTGGTCTTTAAGAAATGAGTTCCATGATGGTGAATGTATTGTAACATTCAATTCTCCAAGCATATGAAAACTTTGTCAGTTGAAAATGAAATGAAGTTTTATAATATTTGTGGCTCACCTCGAGT
>Glyma05g34250.2 sequence type=CDS gene model=Glyma05g34250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAATGGCAACCACCCTTTCCTTCTCCTTTCCCGTGTTCCAAAGCACTCCACTATCCAGAAGAGTCTCAATCTCATGCCACTCATCCAACTCCAACAACGAGACTCTCCGCGTGGCCTTCGCCGGCGGCGGCACCGGCAGCAACGTGTACCCGGCGGTGGCCATCGCGGAGGAGCTGAAAACCGCCAACCCCACGTGCCAGTTTCTCTTCCTCTGCACCCCCGACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTTCTCTTCTTCCCTCACCGTCTCTTCAAGTCTCTGATCCAATGCCTCTGCCACCTCCGACACTTCCAACCCGACGTTGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCCTCGCTGCCAAGCTCAGAGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCCGGCTTCGCCAACTCTCTTCTTTCCTTCTTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTTTCGTGTGTGGGAACCCGGTGAGGTTGTCTATTAGGAACCTCGTTTCCAAGGTGACCGCCATGTCTCATTTTTTCCCCGGTTCGGATAGTGGGAGCAGGATTTTGTTGGTGCTTGCGGGATCTTTTGGCGCCAATGCAGTTAACATTGCGATGCTGAATTTGTATTATCAGATGCTGAGACAGGATAGTGGCTTGTATGTTATTTGGCAAACTGGGGTTGAAGCCTTTGATGAAATGGATAGTCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGGTTTGGCATATGCAGCAGCAGACTTGATTGTCTCCAGAGCAGGTGCAATGACTTGCTATGAAATATTGGCAACAGGGAAACCATCTATCCTGATACCCTCGCCAAATTTCTCTGAGGGGAATCAGTTCAGAAATGCTTCCTTGATGGCAGATTTAGCTGGTGTGACTGTTATAACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTTTAAGGGACAAGAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAGGCTGCAAACCCCAATGCCTCAGCAGAGATTGCAAAACACATTCTCTCCCTTGTAAATCTATCTACCAAAGAGAAAAGAAATACGGCAACAAAGTAG >Glyma05g34250.3 sequence type=CDS gene model=Glyma05g34250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAATGGCAACCACCCTTTCCTTCTCCTTTCCCGTGTTCCAAAGCACTCCACTATCCAGAAGAGTCTCAATCTCATGCCACTCATCCAACTCCAACAACGAGACTCTCCGCGTGGCCTTCGCCGGCGGCGGCACCGGCAGCAACGTGTACCCGGCGGTGGCCATCGCGGAGGAGCTGAAAACCGCCAACCCCACGTGCCAGTTTCTCTTCCTCTGCACCCCCGACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTTCTCTTCTTCCCTCACCGTCTCTTCAAGTCTCTGATCCAATGCCTCTGCCACCTCCGACACTTCCAACCCGACGTTGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCCTCGCTGCCAAGCTCAGAGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCCGGCTTCGCCAACTCTCTTCTTTCCTTCTTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTTTCGTGTGTGGGAACCCGGTGAGGTTGTCTATTAGGAACCTCGTTTCCAAGGTGACCGCCATGTCTCATTTTTTCCCCGGTTCGGATAGTGGGAGCAGGATTTTGTTGGTGCTTGCGGGATCTTTTGGCGCCAATGCAGTTAACATTGCGATGCTGAATTTGTATTATCAGATGCTGAGACAGGATAGTGGCTTGTATGTTATTTGGCAAACTGGGGTTGAAGCCTTTGATGAAATGGATAGTCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGGTTTGGCATATGCAGCAGCAGACTTGATTGTCTCCAGAGCAGGTGCAATGACTTGCTATGAAATATTGGCAACAGGGAAACCATCTATCCTGAATTTGTGGATGGATGCGGAAATCGTATTCTTCTTCACAACAGTGCTGGGTATTTATTTGGACATGAACCATATACCATCCCCTCAACTAGTATAA
>Glyma05g34250.2 sequence type=predicted peptide gene model=Glyma05g34250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMATTLSFSFPVFQSTPLSRRVSISCHSSNSNNETLRVAFAGGGTGSNVYPAVAIAEELKTANPTCQFLFLCTPDSVESAAISSAGYDFASVSSPPQNLLFFPHRLFKSLIQCLCHLRHFQPDVVVGTGGYVSFPACLAAKLRGTNVVIHEPNSVPGFANSLLSFFADAIFVAFNSTLDSFPRNKCFVCGNPVRLSIRNLVSKVTAMSHFFPGSDSGSRILLVLAGSFGANAVNIAMLNLYYQMLRQDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMGLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNFSEGNQFRNASLMADLAGVTVITEDELDSSTLAIAIEKILRDKKKMEDMSERALKAANPNASAEIAKHILSLVNLSTKEKRNTATK* >Glyma05g34250.3 sequence type=predicted peptide gene model=Glyma05g34250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMATTLSFSFPVFQSTPLSRRVSISCHSSNSNNETLRVAFAGGGTGSNVYPAVAIAEELKTANPTCQFLFLCTPDSVESAAISSAGYDFASVSSPPQNLLFFPHRLFKSLIQCLCHLRHFQPDVVVGTGGYVSFPACLAAKLRGTNVVIHEPNSVPGFANSLLSFFADAIFVAFNSTLDSFPRNKCFVCGNPVRLSIRNLVSKVTAMSHFFPGSDSGSRILLVLAGSFGANAVNIAMLNLYYQMLRQDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMGLAYAAADLIVSRAGAMTCYEILATGKPSILNLWMDAEIVFFFTTVLGIYLDMNHIPSPQLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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