Glyma05g34250 - SoyBase

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Report for Sequence Feature Glyma05g34250

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38640534
stop:	38646746
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73740	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr1:27734451-27736008 FORWARD LENGTH=431	SoyBase	E_val: 4.00E-123	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0030259	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid glycosylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PTHR21015	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR21015:SF22	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03033	PFAM	Glycosyltransferase family 28 N-terminal domain	JGI		ISS
PF04101	PFAM	Glycosyltransferase family 28 C-terminal domain	JGI		ISS
UniRef100_B9SFW3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative n=1 Tax=Ricinus communis RepID=B9SFW3_RICCO	SoyBase	E_val: 8.00E-156	ISS
UniRef100_I1K5G7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K5G7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34250

Paralog	Evidence	Comments
Glyma08g05420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g242000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34250

Limit To All Plant Sequences

>Glyma05g34250.3   sequence type=transcript   gene model=Glyma05g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGATTTCATTTAATTTATTCTCTAGTAAACTGTTACATACATATTGAATAAAAAGTCTTTTTTTTAGTAAGAACTTGTTTTCTTTCGCTGGTGGTTGAAACTTTCCAAGTAACTCATAATAACTGCCAGAAATCAGAGTTGAGCTTGAGCAAGCACATGCGTTAATGTTAATGGCAACCACCCTTTCCTTCTCCTTTCCCGTGTTCCAAAGCACTCCACTATCCAGAAGAGTCTCAATCTCATGCCACTCATCCAACTCCAACAACGAGACTCTCCGCGTGGCCTTCGCCGGCGGCGGCACCGGCAGCAACGTGTACCCGGCGGTGGCCATCGCGGAGGAGCTGAAAACCGCCAACCCCACGTGCCAGTTTCTCTTCCTCTGCACCCCCGACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTTCTCTTCTTCCCTCACCGTCTCTTCAAGTCTCTGATCCAATGCCTCTGCCACCTCCGACACTTCCAACCCGACGTTGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCCTCGCTGCCAAGCTCAGAGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCCGGCTTCGCCAACTCTCTTCTTTCCTTCTTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTTTCGTGTGTGGGAACCCGGTGAGGTTGTCTATTAGGAACCTCGTTTCCAAGGTGACCGCCATGTCTCATTTTTTCCCCGGTTCGGATAGTGGGAGCAGGATTTTGTTGGTGCTTGCGGGATCTTTTGGCGCCAATGCAGTTAACATTGCGATGCTGAATTTGTATTATCAGATGCTGAGACAGGATAGTGGCTTGTATGTTATTTGGCAAACTGGGGTTGAAGCCTTTGATGAAATGGATAGTCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGGTTTGGCATATGCAGCAGCAGACTTGATTGTCTCCAGAGCAGGTGCAATGACTTGCTATGAAATATTGGCAACAGGGAAACCATCTATCCTGAATTTGTGGATGGATGCGGAAATCGTATTCTTCTTCACAACAGTGCTGGGTATTTATTTGGACATGAACCATATACCATCCCCTCAACTAGTATAACGATACCCTCGCCAAATTTCTCTGAGGGGAATCAGTTCAGAAATGCTTCCTTGATGGCAGATTTAGCTGGTGTGACTGTTATAACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTTTAAGGGACAAGAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAGGCTGCAAACCCCAATGCCTCAGCAGAGATTGCAAAACACATTCTCTCCCTTGTAAATCTATCTACCAAAGAGAAAAGAAATACGGCAACAAAGTAGAATCCTAGCAACTAGCATTTCATGGTGGTTGAAATAAATTCATGCTTACAACTGTAAGCTTTGCTTGTGGGCCAACAACACCGATAGAAATTTCAAGAAGAAAGTTGCACTGCTCTTACAACTTGATAGCATATTGCTAGGAATGTGATATATGATAATGATAATGCTGAGAAGTATGCGAGCTCAGCTCATATATCACTGGCATTCAAATGAGTAAGAGACCAAGGATTGAGACTTTAATTGCTCATGCAGGGATATGATATGACATGAGAGTTGTCTACTTTTTATTTATTTAATTTTGTGAACCATTATGCATGGAGTGGTCTATTTTTTGTGGTTCACATCGAGACATCCTCGTCACTAACAAAGTGCCAAGATGAGTTTGTGTTTTCATGACTGCCCATGTCGATAATATTTGGGAATAAGGAAATGAGTGGTCTTTAAGAAATGAGTTCCATGATGGTGAATGTATTGTAACATTCAATTCTCCAAGCATATGAAAACTTTGTCAGTTGAAAATGAAATGAAGTTTTATAATATTTGTGGCTCACCTCGAGT

Coding sequences of Glyma05g34250

Limit To All Plant Sequences

>Glyma05g34250.2   sequence type=CDS   gene model=Glyma05g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAATGGCAACCACCCTTTCCTTCTCCTTTCCCGTGTTCCAAAGCACTCCACTATCCAGAAGAGTCTCAATCTCATGCCACTCATCCAACTCCAACAACGAGACTCTCCGCGTGGCCTTCGCCGGCGGCGGCACCGGCAGCAACGTGTACCCGGCGGTGGCCATCGCGGAGGAGCTGAAAACCGCCAACCCCACGTGCCAGTTTCTCTTCCTCTGCACCCCCGACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTTCTCTTCTTCCCTCACCGTCTCTTCAAGTCTCTGATCCAATGCCTCTGCCACCTCCGACACTTCCAACCCGACGTTGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCCTCGCTGCCAAGCTCAGAGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCCGGCTTCGCCAACTCTCTTCTTTCCTTCTTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTTTCGTGTGTGGGAACCCGGTGAGGTTGTCTATTAGGAACCTCGTTTCCAAGGTGACCGCCATGTCTCATTTTTTCCCCGGTTCGGATAGTGGGAGCAGGATTTTGTTGGTGCTTGCGGGATCTTTTGGCGCCAATGCAGTTAACATTGCGATGCTGAATTTGTATTATCAGATGCTGAGACAGGATAGTGGCTTGTATGTTATTTGGCAAACTGGGGTTGAAGCCTTTGATGAAATGGATAGTCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGGTTTGGCATATGCAGCAGCAGACTTGATTGTCTCCAGAGCAGGTGCAATGACTTGCTATGAAATATTGGCAACAGGGAAACCATCTATCCTGATACCCTCGCCAAATTTCTCTGAGGGGAATCAGTTCAGAAATGCTTCCTTGATGGCAGATTTAGCTGGTGTGACTGTTATAACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTTTAAGGGACAAGAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAGGCTGCAAACCCCAATGCCTCAGCAGAGATTGCAAAACACATTCTCTCCCTTGTAAATCTATCTACCAAAGAGAAAAGAAATACGGCAACAAAGTAG

>Glyma05g34250.3   sequence type=CDS   gene model=Glyma05g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAATGGCAACCACCCTTTCCTTCTCCTTTCCCGTGTTCCAAAGCACTCCACTATCCAGAAGAGTCTCAATCTCATGCCACTCATCCAACTCCAACAACGAGACTCTCCGCGTGGCCTTCGCCGGCGGCGGCACCGGCAGCAACGTGTACCCGGCGGTGGCCATCGCGGAGGAGCTGAAAACCGCCAACCCCACGTGCCAGTTTCTCTTCCTCTGCACCCCCGACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTTCTCTTCTTCCCTCACCGTCTCTTCAAGTCTCTGATCCAATGCCTCTGCCACCTCCGACACTTCCAACCCGACGTTGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCCTCGCTGCCAAGCTCAGAGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCCGGCTTCGCCAACTCTCTTCTTTCCTTCTTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTTTCGTGTGTGGGAACCCGGTGAGGTTGTCTATTAGGAACCTCGTTTCCAAGGTGACCGCCATGTCTCATTTTTTCCCCGGTTCGGATAGTGGGAGCAGGATTTTGTTGGTGCTTGCGGGATCTTTTGGCGCCAATGCAGTTAACATTGCGATGCTGAATTTGTATTATCAGATGCTGAGACAGGATAGTGGCTTGTATGTTATTTGGCAAACTGGGGTTGAAGCCTTTGATGAAATGGATAGTCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGGTTTGGCATATGCAGCAGCAGACTTGATTGTCTCCAGAGCAGGTGCAATGACTTGCTATGAAATATTGGCAACAGGGAAACCATCTATCCTGAATTTGTGGATGGATGCGGAAATCGTATTCTTCTTCACAACAGTGCTGGGTATTTATTTGGACATGAACCATATACCATCCCCTCAACTAGTATAA

Predicted protein sequences of Glyma05g34250

Limit To All Plant Sequences

>Glyma05g34250.2   sequence type=predicted peptide   gene model=Glyma05g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMATTLSFSFPVFQSTPLSRRVSISCHSSNSNNETLRVAFAGGGTGSNVYPAVAIAEELKTANPTCQFLFLCTPDSVESAAISSAGYDFASVSSPPQNLLFFPHRLFKSLIQCLCHLRHFQPDVVVGTGGYVSFPACLAAKLRGTNVVIHEPNSVPGFANSLLSFFADAIFVAFNSTLDSFPRNKCFVCGNPVRLSIRNLVSKVTAMSHFFPGSDSGSRILLVLAGSFGANAVNIAMLNLYYQMLRQDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMGLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPNFSEGNQFRNASLMADLAGVTVITEDELDSSTLAIAIEKILRDKKKMEDMSERALKAANPNASAEIAKHILSLVNLSTKEKRNTATK*

>Glyma05g34250.3   sequence type=predicted peptide   gene model=Glyma05g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMATTLSFSFPVFQSTPLSRRVSISCHSSNSNNETLRVAFAGGGTGSNVYPAVAIAEELKTANPTCQFLFLCTPDSVESAAISSAGYDFASVSSPPQNLLFFPHRLFKSLIQCLCHLRHFQPDVVVGTGGYVSFPACLAAKLRGTNVVIHEPNSVPGFANSLLSFFADAIFVAFNSTLDSFPRNKCFVCGNPVRLSIRNLVSKVTAMSHFFPGSDSGSRILLVLAGSFGANAVNIAMLNLYYQMLRQDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMGLAYAAADLIVSRAGAMTCYEILATGKPSILNLWMDAEIVFFFTTVLGIYLDMNHIPSPQLV*

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