SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G45688 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342 | SoyBase | E_val: 1.00E-115 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF03168 | PFAM | Late embryogenesis abundant protein | JGI | ISS | |
| UniRef100_Q7XST6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0039K24.20 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XST6_ORYSJ | SoyBase | E_val: 8.00E-112 | ISS |
| UniRef100_UPI00018C6B6C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6B6C related cluster n=1 Tax=unknown RepID=UPI00018C6B6C | SoyBase | E_val: 0 | ISS |
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Glyma05g34200 not represented in the dataset |
Glyma05g34200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g242600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g34200.2 sequence type=transcript gene model=Glyma05g34200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGACAACTGTAACGCAGCTGTCGGGTCATTACTTGTTCACCTTCTTCCTCTTTCCCACGCTCCAAACCATATAACATAATACACAACCTAACCACCGCAACGCAATAAAGCAAGCAAGCATTCCCTTCTTTTTTTTTTTTTATGTCGTGTCGTGCCCTTTAATCTTAAAGGATTGCTTTTCCTTAGCGTTAAACTTAGTCAAAGCACAAATGTTTTTTGTTTTTATTTCAATCAATGAGCACATAATACATCCAATTAATCCCTATCCCCCACCGAGCGAAATAATTTAATAATGAGCCACCAATGCAAATACTTTGGTAGATAAAATAGAGGTAGAGGTGTGGTAGATTTGAGAGCAACATTGAAATGCATGCCAAGACAGACTCGGAGGTAACAAGCCTGGATGCGTCGTCCAGCACAAGGTCTCCTCGGCGAGCAGTGTACTACGTTCAGAGCCCTTCCCACGATGGGGAGAAAACGACGACGTCGTTGCACTCCACCCCTGTTCTCAGCCCCATGGGTTCCCCTCCTCACTCTCACTCCTCCTCCAGCCGCTTCTCCGCTTCACGCCACCGCAATAACCATAATAATAAATCTTGGAAGGGCATCGACGTCATCGAAGAAGAGGGTCTTCTCCAATCCGAATTAGATCGCCAACATTCTCTCTCTCGTCGATACTATTTCCTCGCCTTCCTCCTCGGCTTCTTCCTTCTCTTCTCTCTCTTCTCTCTCATCCTCTGGTGTGCCAGCCGACCCATGAAGCCCAAAATCCTCATCAAGAGTATAAAATTTGACCATCTCAGAGTTCAAGCTGGTTCCGATTCCAGCGGAGTAGCCACCGACATGATCACCATGAATTCCACCGTCAAATTCACTTATCGCAACACTGGAACATTCTTTGGGGTCCATGTCACATCCACACCTTTCGATCTCTCCTATTCAGATATTGTAATTGCTACGGGAAATGTAAGTATATACACACAAATTGATCACATTATTAATTTAATTATTTGATTTGATTTGAATTGATGTACTACGCAGTTGAAGAAGTTCTATCAGTCAAGGAAGAGTCAGAGATTAGTGAGTGTGGCGGTGATGGGGAACAAGATCCCGTTGTATGGAGGAGGTGCTAGCTTGAGTAGCTCAACCGGTGTGCCCACGCTGCCTGTTCCTTTGAATTTGACCTTTGTCATTCGATCCAGAGCTTACGTGCTTGGGAGATTGGTGAAGCCCAAGTACTACAAAAGGGTTCAATGTTCCATCAATTTGGATCCCAAGAAGATTAATGTTCCAATTTCCCTCAAGCATTCTTGCACCTATGATTGATTGAGTCGCAAGTGAGGAAAGGAATTAAGAAGCAGCACATGGGAAAGAAAAATATTTTTTTTTACTACTATTCCTTCATGATTCGTTGGTTTTCTATCTTGGCTGAGGAAAGTAATGTGTATACAGCTCATAGGGCAGGATTGGAAGGACGCGTGCGTCCTTTGTTTTTTTTGCACATTTTTGGCTGCCTCAATAGTATGCACAGACGTGATGGATACTGAAGATAATTAAAGGCATGTTGGATTTTTTCTTTAAATAATTTTGTCCCATCATGTAAAAGGAAGAAATAATGTTATTATGTAGTACTTAATCTTCAATGTTGTTTTCATTTTTCAGATAATTATAGCCGCCGAGAAATTTGACCTTTTTTTTAACGGGTTTGTTTGTGATCTGTTGTTGGCTAAGCTCCATAACCGCGACGTCATCAAATCAAAATGAATTCGGAACATTTAACACAATTTATTAAACGACAAT
>Glyma05g34200.1 sequence type=CDS gene model=Glyma05g34200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATGCCAAGACAGACTCGGAGGTAACAAGCCTGGATGCGTCGTCCAGCACAAGGTCTCCTCGGCGAGCAGTGTACTACGTTCAGAGCCCTTCCCACGATGGGGAGAAAACGACGACGTCGTTGCACTCCACCCCTGTTCTCAGCCCCATGGGTTCCCCTCCTCACTCTCACTCCTCCTCCAGCCGCTTCTCCGCTTCACGCCACCGCAATAACCATAATAATAAATCTTGGAAGGGCATCGACGTCATCGAAGAAGAGGGTCTTCTCCAATCCGAATTAGATCGCCAACATTCTCTCTCTCGTCGATACTATTTCCTCGCCTTCCTCCTCGGCTTCTTCCTTCTCTTCTCTCTCTTCTCTCTCATCCTCTGGTGTGCCAGCCGACCCATGAAGCCCAAAATCCTCATCAAGAGTATAAAATTTGACCATCTCAGAGTTCAAGCTGGTTCCGATTCCAGCGGAGTAGCCACCGACATGATCACCATGAATTCCACCGTCAAATTCACTTATCGCAACACTGGAACATTCTTTGGGGTCCATGTCACATCCACACCTTTCGATCTCTCCTATTCAGATATTGTAATTGCTACGGGAAATTTGAAGAAGTTCTATCAGTCAAGGAAGAGTCAGAGATTAGTGAGTGTGGCGGTGATGGGGAACAAGATCCCGTTGTATGGAGGAGGTGCTAGCTTGAGTAGCTCAACCGGTGTGCCCACGCTGCCTGTTCCTTTGAATTTGACCTTTGTCATTCGATCCAGAGCTTACGTGCTTGGGAGATTGGTGAAGCCCAAGTACTACAAAAGGGTTCAATGTTCCATCAATTTGGATCCCAAGAAGATTAATGTTCCAATTTCCCTCAAGCATTCTTGCACCTATGATTGA >Glyma05g34200.2 sequence type=CDS gene model=Glyma05g34200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATGCCAAGACAGACTCGGAGGTAACAAGCCTGGATGCGTCGTCCAGCACAAGGTCTCCTCGGCGAGCAGTGTACTACGTTCAGAGCCCTTCCCACGATGGGGAGAAAACGACGACGTCGTTGCACTCCACCCCTGTTCTCAGCCCCATGGGTTCCCCTCCTCACTCTCACTCCTCCTCCAGCCGCTTCTCCGCTTCACGCCACCGCAATAACCATAATAATAAATCTTGGAAGGGCATCGACGTCATCGAAGAAGAGGGTCTTCTCCAATCCGAATTAGATCGCCAACATTCTCTCTCTCGTCGATACTATTTCCTCGCCTTCCTCCTCGGCTTCTTCCTTCTCTTCTCTCTCTTCTCTCTCATCCTCTGGTGTGCCAGCCGACCCATGAAGCCCAAAATCCTCATCAAGAGTATAAAATTTGACCATCTCAGAGTTCAAGCTGGTTCCGATTCCAGCGGAGTAGCCACCGACATGATCACCATGAATTCCACCGTCAAATTCACTTATCGCAACACTGGAACATTCTTTGGGGTCCATGTCACATCCACACCTTTCGATCTCTCCTATTCAGATATTGTAATTGCTACGGGAAATGTAAGTATATACACACAAATTGATCACATTATTAATTTAATTATTTGA
>Glyma05g34200.1 sequence type=predicted peptide gene model=Glyma05g34200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHAKTDSEVTSLDASSSTRSPRRAVYYVQSPSHDGEKTTTSLHSTPVLSPMGSPPHSHSSSSRFSASRHRNNHNNKSWKGIDVIEEEGLLQSELDRQHSLSRRYYFLAFLLGFFLLFSLFSLILWCASRPMKPKILIKSIKFDHLRVQAGSDSSGVATDMITMNSTVKFTYRNTGTFFGVHVTSTPFDLSYSDIVIATGNLKKFYQSRKSQRLVSVAVMGNKIPLYGGGASLSSSTGVPTLPVPLNLTFVIRSRAYVLGRLVKPKYYKRVQCSINLDPKKINVPISLKHSCTYD* >Glyma05g34200.2 sequence type=predicted peptide gene model=Glyma05g34200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHAKTDSEVTSLDASSSTRSPRRAVYYVQSPSHDGEKTTTSLHSTPVLSPMGSPPHSHSSSSRFSASRHRNNHNNKSWKGIDVIEEEGLLQSELDRQHSLSRRYYFLAFLLGFFLLFSLFSLILWCASRPMKPKILIKSIKFDHLRVQAGSDSSGVATDMITMNSTVKFTYRNTGTFFGVHVTSTPFDLSYSDIVIATGNVSIYTQIDHIINLII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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