Glyma05g34170 - SoyBase

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Report for Sequence Feature Glyma05g34170

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38571323
stop:	38573848
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18180	AT	Annotation by Michelle Graham. TAIR10: Glycosyltransferase family 61 protein \| chr3:6230270-6231878 FORWARD LENGTH=470	SoyBase	E_val: 6.00E-159	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG4698	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR20961	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PF04577	PFAM	Protein of unknown function (DUF563)	JGI		ISS
UniRef100_G7LCG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7LCG2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A9BF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A9BF related cluster n=1 Tax=unknown RepID=UPI000233A9BF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34170

Paralog	Evidence	Comments
Glyma08g05490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g242900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g34170

Limit To All Plant Sequences

>Glyma05g34170.2   sequence type=transcript   gene model=Glyma05g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGTTTTGGAGAATCCTATTGATTGAAGACATTAAAACTACGTGGTGGGCAACATTGAATAGAAAATGCACATCAACCATCCTCCATTTGTCATACAGAAGTGTCTCAAAATCTTGCTTAGCCGACTACTCAAACCTTTTAGGACGTCTGCAAAAAATTTATGGTCATCCACTAATCCAGTGTTAATCAAAATGGCTTCTATTTGTGAGATGGTACTGTAGTCCTGACATAGAGAAGGGTTCTTGAGTGATTAAAAAAAATGATTTACGACACTGTACTAGCCAAGAGCTTTAGTCGTTATGATCAGAAAAGGTTGGGATATGGAGCATTTGTGAGCTGCTTGCTCATAGTTTTGAGTCTTTGCACTGTGTTTAAGCCTTACTTGGGTCCTGTGCATGTTTGTGAGTGCTTCTACACCCACTTGCATTAATCACTTATTTCCATAATCCAAGACCAAGTACAAGCATACACTGTGCTTTGTGAACCTGAAGCTCTTCATCGATGTTGACACCAAAATGCTGATCACCAGAAGCTCTTCACAAATAGCCAAAGTTGAAGGAAAAGAAACAAAGAAAGAGGAACTACTATGCACTTCAGAAGAAAGAACAAAATTTTGCCAAGCAAGGGGAGACATCAGAGTCCATGGAAAATCCTCCACTGTATACATTGTTTCATCTAAGACAACTATGTCGGAAAAAAACATGTCATGGAATTTAAAGCCTTATGCACGGAGGGACGATGTAGATGCAATGATTCGTGTGAGAGAATGGTCAGTGAAAGCAGTAAATGTTAGCCAGAAAGCTCCCCAATGCACCCAATATCACAACATTCCGGCTGTATTATTTTCTACCGGAGGGTATGCTGGTAACCACTTCCATGAATTCACTGACATTGTTATTCCACTGTTTTTGACTGCTAGACAATTCAATGGAGAAGTACAATTTATCATAACTGATAAACGTCCTTGGTGGATTTCAAAGCACAAACCACTTCTTAAGAAGCTGTCCAACTATGAGACTATGGACATTGATGGAGATGATGAAGTTCATTGCTTCCCAAGGGTGACCGTGGGTCTCAAACGGTATCAAAAAGAGCTAAGCATTGAGCCTCAAAAGTATTCCTATTCTATGAAAGACTTCAGGGATCTTTTGAGAAGTTCCTATGCATTGAAGAGAGTTGAAGCAATCAAAACCAGAGATGGTCTACGTGGGAAGCCAAGGCTCATGATTCTTTCAAGAAAAAGATCAAGATTCTTCACCAATACAGATGAAATAGCAAAAATGGCTGAGAGTTTGGGCTTTGATGTCATTATTAAGGAAGCAGGGTGGAGCATGTGGGGCTTTGCAAATGTTGTGAATTCTTGTGATGTGTTATTGGGAGTTCATGGTGCTGGTCTCACTAACATACTTTTCCTTCCGGAAAATGCAGTTTTCGTCCAAGTAGTGCCTTATGGTGGGGTTACATTGGACTGGCTTGCCACAAATGACTTTGGAAACCCCTCAAAGGATATGAACATAAAGTACTTGGAATACAAAATAAGCTTGGAGGAAAGCACTCTTATACAACAATACCCGTTAGATCATATGTTTATAAAGGATCCCCCACTGATTGAGAAAATAGGATGGGAAGAATTTAAGTCTGTGTATTTGGACAAACAAAATGTAAAGCTTGATGTTGATAGGTTTAGGCCTACATTGCAGAAAGCCCTTGAGCTATTGCATCAATAAGTACGGTTTGTCTTTTTGATCCAGTAAGCTGGATGGGAGCTTTGAGTGTCACAGTTTATTGTTCGCAGTATTTTTCCTTTTTACTGATATTTATCTATTGTTTTTCAATAAGGAGCTTACAGAATGAGGGACAAAGAAATCACCATCTGCAACAAAATTTCTGTGTGGAAGGAAAATGATGTTCAATGGACCTAAAGCATTTCAGGCACCACTTTTAGGACATCTTGTATTAATGACAAACATTTTAGGCTATGTCCTGTGTTTGGCTATGTCTTAAAGATTCATTTTAGGAAATAATGGTTTTTCTTTTTCAGAAGTTCTCTTGGCAAAATAATGATAATTATTGAAGTTGTTTGTTGCTGGCATTTTTTACTTTTAGATGTGATTTTTCAAC

Coding sequences of Glyma05g34170

Limit To All Plant Sequences

>Glyma05g34170.1   sequence type=CDS   gene model=Glyma05g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTACGACACTGTACTAGCCAAGAGCTTTAGTCGTTATGATCAGAAAAGGTTGGGATATGGAGCATTTGTGAGCTGCTTGCTCATAGTTTTGAGTCTTTGCACTGTGTTTAAGCCTTACTTGGGTCCTGTGCATGTTTTGAACCTGAAGCTCTTCATCGATGTTGACACCAAAATGCTGATCACCAGAAGCTCTTCACAAATAGCCAAAGTTGAAGGAAAAGAAACAAAGAAAGAGGAACTACTATGCACTTCAGAAGAAAGAACAAAATTTTGCCAAGCAAGGGGAGACATCAGAGTCCATGGAAAATCCTCCACTGTATACATTGTTTCATCTAAGACAACTATGTCGGAAAAAAACATGTCATGGAATTTAAAGCCTTATGCACGGAGGGACGATGTAGATGCAATGATTCGTGTGAGAGAATGGTCAGTGAAAGCAGTAAATGTTAGCCAGAAAGCTCCCCAATGCACCCAATATCACAACATTCCGGCTGTATTATTTTCTACCGGAGGGTATGCTGGTAACCACTTCCATGAATTCACTGACATTGTTATTCCACTGTTTTTGACTGCTAGACAATTCAATGGAGAAGTACAATTTATCATAACTGATAAACGTCCTTGGTGGATTTCAAAGCACAAACCACTTCTTAAGAAGCTGTCCAACTATGAGACTATGGACATTGATGGAGATGATGAAGTTCATTGCTTCCCAAGGGTGACCGTGGGTCTCAAACGGTATCAAAAAGAGCTAAGCATTGAGCCTCAAAAGTATTCCTATTCTATGAAAGACTTCAGGGATCTTTTGAGAAGTTCCTATGCATTGAAGAGAGTTGAAGCAATCAAAACCAGAGATGGTCTACGTGGGAAGCCAAGGCTCATGATTCTTTCAAGAAAAAGATCAAGATTCTTCACCAATACAGATGAAATAGCAAAAATGGCTGAGAGTTTGGGCTTTGATGTCATTATTAAGGAAGCAGGGTGGAGCATGTGGGGCTTTGCAAATGTTGTGAATTCTTGTGATGTGTTATTGGGAGTTCATGGTGCTGGTCTCACTAACATACTTTTCCTTCCGGAAAATGCAGTTTTCGTCCAAGTAGTGCCTTATGGTGGGGTTACATTGGACTGGCTTGCCACAAATGACTTTGGAAACCCCTCAAAGGATATGAACATAAAGTACTTGGAATACAAAATAAGCTTGGAGGAAAGCACTCTTATACAACAATACCCGTTAGATCATATGTTTATAAAGGATCCCCCACTGATTGAGAAAATAGGATGGGAAGAATTTAAGTCTGTGTATTTGGACAAACAAAATGTAAAGCTTGATGTTGATAGGTTTAGGCCTACATTGCAGAAAGCCCTTGAGCTATTGCATCAATAA

>Glyma05g34170.2   sequence type=CDS   gene model=Glyma05g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGATCACCAGAAGCTCTTCACAAATAGCCAAAGTTGAAGGAAAAGAAACAAAGAAAGAGGAACTACTATGCACTTCAGAAGAAAGAACAAAATTTTGCCAAGCAAGGGGAGACATCAGAGTCCATGGAAAATCCTCCACTGTATACATTGTTTCATCTAAGACAACTATGTCGGAAAAAAACATGTCATGGAATTTAAAGCCTTATGCACGGAGGGACGATGTAGATGCAATGATTCGTGTGAGAGAATGGTCAGTGAAAGCAGTAAATGTTAGCCAGAAAGCTCCCCAATGCACCCAATATCACAACATTCCGGCTGTATTATTTTCTACCGGAGGGTATGCTGGTAACCACTTCCATGAATTCACTGACATTGTTATTCCACTGTTTTTGACTGCTAGACAATTCAATGGAGAAGTACAATTTATCATAACTGATAAACGTCCTTGGTGGATTTCAAAGCACAAACCACTTCTTAAGAAGCTGTCCAACTATGAGACTATGGACATTGATGGAGATGATGAAGTTCATTGCTTCCCAAGGGTGACCGTGGGTCTCAAACGGTATCAAAAAGAGCTAAGCATTGAGCCTCAAAAGTATTCCTATTCTATGAAAGACTTCAGGGATCTTTTGAGAAGTTCCTATGCATTGAAGAGAGTTGAAGCAATCAAAACCAGAGATGGTCTACGTGGGAAGCCAAGGCTCATGATTCTTTCAAGAAAAAGATCAAGATTCTTCACCAATACAGATGAAATAGCAAAAATGGCTGAGAGTTTGGGCTTTGATGTCATTATTAAGGAAGCAGGGTGGAGCATGTGGGGCTTTGCAAATGTTGTGAATTCTTGTGATGTGTTATTGGGAGTTCATGGTGCTGGTCTCACTAACATACTTTTCCTTCCGGAAAATGCAGTTTTCGTCCAAGTAGTGCCTTATGGTGGGGTTACATTGGACTGGCTTGCCACAAATGACTTTGGAAACCCCTCAAAGGATATGAACATAAAGTACTTGGAATACAAAATAAGCTTGGAGGAAAGCACTCTTATACAACAATACCCGTTAGATCATATGTTTATAAAGGATCCCCCACTGATTGAGAAAATAGGATGGGAAGAATTTAAGTCTGTGTATTTGGACAAACAAAATGTAAAGCTTGATGTTGATAGGTTTAGGCCTACATTGCAGAAAGCCCTTGAGCTATTGCATCAATAA

Predicted protein sequences of Glyma05g34170

Limit To All Plant Sequences

>Glyma05g34170.1   sequence type=predicted peptide   gene model=Glyma05g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIYDTVLAKSFSRYDQKRLGYGAFVSCLLIVLSLCTVFKPYLGPVHVLNLKLFIDVDTKMLITRSSSQIAKVEGKETKKEELLCTSEERTKFCQARGDIRVHGKSSTVYIVSSKTTMSEKNMSWNLKPYARRDDVDAMIRVREWSVKAVNVSQKAPQCTQYHNIPAVLFSTGGYAGNHFHEFTDIVIPLFLTARQFNGEVQFIITDKRPWWISKHKPLLKKLSNYETMDIDGDDEVHCFPRVTVGLKRYQKELSIEPQKYSYSMKDFRDLLRSSYALKRVEAIKTRDGLRGKPRLMILSRKRSRFFTNTDEIAKMAESLGFDVIIKEAGWSMWGFANVVNSCDVLLGVHGAGLTNILFLPENAVFVQVVPYGGVTLDWLATNDFGNPSKDMNIKYLEYKISLEESTLIQQYPLDHMFIKDPPLIEKIGWEEFKSVYLDKQNVKLDVDRFRPTLQKALELLHQ*

>Glyma05g34170.2   sequence type=predicted peptide   gene model=Glyma05g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLITRSSSQIAKVEGKETKKEELLCTSEERTKFCQARGDIRVHGKSSTVYIVSSKTTMSEKNMSWNLKPYARRDDVDAMIRVREWSVKAVNVSQKAPQCTQYHNIPAVLFSTGGYAGNHFHEFTDIVIPLFLTARQFNGEVQFIITDKRPWWISKHKPLLKKLSNYETMDIDGDDEVHCFPRVTVGLKRYQKELSIEPQKYSYSMKDFRDLLRSSYALKRVEAIKTRDGLRGKPRLMILSRKRSRFFTNTDEIAKMAESLGFDVIIKEAGWSMWGFANVVNSCDVLLGVHGAGLTNILFLPENAVFVQVVPYGGVTLDWLATNDFGNPSKDMNIKYLEYKISLEESTLIQQYPLDHMFIKDPPLIEKIGWEEFKSVYLDKQNVKLDVDRFRPTLQKALELLHQ*

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