SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73700 | AT | Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:27717554-27719630 REVERSE LENGTH=476 | SoyBase | E_val: 2.00E-71 | ISS |
| GO:0006855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015238 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015297 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antiporter activity | SoyBase | N/A | ISS |
| PTHR11206 | Panther | MULTIDRUG RESISTANCE PUMP | JGI | ISS | |
| PTHR11206:SF51 | Panther | DNA DAMAGE-INDUCIBLE PROTEIN | JGI | ISS | |
| UniRef100_G7LCG8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein TRANSPARENT TESTA n=1 Tax=Medicago truncatula RepID=G7LCG8_MEDTR | SoyBase | E_val: 8.00E-84 | ISS |
| UniRef100_I1K5F8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5F8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g34160 not represented in the dataset |
Glyma05g34160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g243100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g34160.1 sequence type=CDS gene model=Glyma05g34160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAATTGTGAGAGAGGAAGTGGTGGAAGAAGTGAAGAGGCTATGGTTAGCAGTGCCTCTCTTCTCAGTTGGAATTTTGCTACACATTCTTCAAGCCATCTCTATTATGTTTGTTGGCCATCTTGGTACCCTCCCTCTTTCCGGTGCTTCCATGGCCTCTTCCTTCGCATCAGTTACCGGCTTCAACTTATTACCTTTTTATTTATTTGCATCAAGCAAACTAGTTATTGGGGTTAGCTACTGCACTGGACACATTTTGTGGTCAATCAAATGGAGCAGGACAGTACCATATGCTTGGCATACACATGCAGAGATCCATGCTTGTTGCTTTAATGACATGATCCCAAGTTTATTTGCTTACGGTATTCTTCGGTGCATTCTCAAGTTCTTGCAAACGCAAAAGATTGTGTTCCCAATGGTGCTAACTTCAGGAATTGCAGCTGTGCTTCATGTCCTTTTCTGTTGGCTTTTGGTTTTTAAGTCGGGGCTTGCAAACAGAGGAGCAGCCTTGGCCAATTCCATATCTTATTGGGTAAATGCAATCTTGATTTCTCTGTATGTCAGGTTCTCTTCTGCATGCAAACACTCTTGGACAGGTTTTTCCAAGATGGCCCTGCACAACCTTCTTGATTTCCTTAAACTCGAGTGGACATTTAAACTGATGGTCCTCATGTCTGGTCTTCTTCCTAACCCAAAATTAGAAACTTCAGTATTTTCAATATGCCTTAATACATTTGGTCTAGGTTGGATGATCCCTTTCGGATTCAGTGCTGCTATAATTGAAACTGAATATGCCATATACAGCACCCATGTTTGTGCTAGTTTTGTGCGCTGTCAAGTAGTCTCCTACATAAGATTCATCGTCACTATTGAATCAACTAAGTCATTAATGTCAACAGCTACAATAAATATAAAAACACCAAAAGAAAAAGAAAAAAAAATCATTCAACCAATTAAAATCCAATTCACTTATCTGAGTTCCCCCAAAGTTTATTTTTTTTCAAGCGCCATATACAGCAACTGCTCGAGAAAATGCCCTCACACCATGTTTTCCATGAACTCAAGTATACTGGTCTCTGAAAACGTAAAGAACAAAAATGTACAAGGGGGAGCAGAGTGA
>Glyma05g34160.1 sequence type=predicted peptide gene model=Glyma05g34160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRIVREEVVEEVKRLWLAVPLFSVGILLHILQAISIMFVGHLGTLPLSGASMASSFASVTGFNLLPFYLFASSKLVIGVSYCTGHILWSIKWSRTVPYAWHTHAEIHACCFNDMIPSLFAYGILRCILKFLQTQKIVFPMVLTSGIAAVLHVLFCWLLVFKSGLANRGAALANSISYWVNAILISLYVRFSSACKHSWTGFSKMALHNLLDFLKLEWTFKLMVLMSGLLPNPKLETSVFSICLNTFGLGWMIPFGFSAAIIETEYAIYSTHVCASFVRCQVVSYIRFIVTIESTKSLMSTATINIKTPKEKEKKIIQPIKIQFTYLSSPKVYFFSSAIYSNCSRKCPHTMFSMNSSILVSENVKNKNVQGGAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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