Report for Sequence Feature Glyma05g34090
Feature Type: gene_model
Chromosome: Gm05
Start: 38526145
stop: 38528922
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g34090
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18165 AT
Annotation by Michelle Graham. TAIR10: modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253
SoyBase E_val: 2.00E-113 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0009870 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent
SoyBase N/A ISS
GO:0010204 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG3096
KOG
Spliceosome-associated coiled-coil protein
JGI ISS
PTHR13296 Panther
BCAS2 PROTEIN
JGI ISS
PF05700 PFAM
Breast carcinoma amplified sequence 2 (BCAS2)
JGI ISS
UniRef100_G7LD93 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor SPF27-like protein n=1 Tax=Medicago truncatula RepID=G7LD93_MEDTR
SoyBase E_val: 2.00E-150 ISS
UniRef100_I1KQH7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQH7_SOYBN
SoyBase E_val: 2.00E-168 ISS
Expression Patterns of Glyma05g34090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g34090
Paralog Evidence Comments
Glyma08g05590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g34090 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g243600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g34090
Transcripts of Glyma05g34090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g34090.2 sequence type=transcript gene model=Glyma05g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTCTGCGCGGAGGAAAACCTTCACTATCTCTCTCTCTTCAAGCAAGCGACCATGGCGGATGGAAGCAACGGGGGAGTTCTAATGCTGGAAGCCCCACCGTCTTACGGTAGGCCTACCGGTTCTAACGCGGAAATAATCGACGCATTGCCTTACATTGATGACGACTACGCAGACCCCAGAGTCAAACTTGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAAAGATTTCCCTCCTCTTCCCAACTCCAATTTCCAGAACTACCCAATGATTGCGAGAGAGTACGAACGTGTGAGAGCCGGAAGACCTCCCGTTGCTCTTGATAGATCGCGCTACGAATTGGAAATGCCGCCGGCGAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACACCTGCTGCAATATCAGATTATGAGGATGGAAAATTTGGATTTGATGTTAAAATATGGTCCCGATACCTGGAAACAACACAACCAAAGATTGGAAGTATACTTATCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAATTGAAAAGAGGAGCAGCAGAAAGAGGCTGGAACTTGGAAGCTGTAACTGAAAATGGCCAATTGGCAAAATCCGAATTATGAGATTCGTATGTTCTCATCTAGTTTTGTATCCGTAATGAATTTGTTCAGCCTAAAACTATGCTATTGTACCTCTCAATGTTTAGTACAGATCTGGGTTTCACTAATCCAGTTCTAGTCCAGCCTACCATCATCCTCATTTCCTCCAATGGCTTCCATTTCGACTACATGTTCAAGTCCCCAACTCACAACATCCACCGTTTAATCCTAAACGGCACTGAGGCCGAATTAATAGCATCATAGGGAGGCTCGTTCAAGTTTTGGAACAAAGAGGAGTTAGACGTCCAATGCCTGGTTAATTGGTGCAAGGGTGCAAACGATTCTTTGATCCTGAATCTAGATCTGTGGATTTGTTTACCTTTTGTGATACATGTTTTCAATTTTTGTTTGTTGTGGATTCAAATTTGTTGCTGCTGTCATAGATATTCAATGAGCTAATATGTTGAAAACCTAAGGGATGCAAATTCTGCAGTTTTTAACCTCAGAAAATTGTTGA
Coding sequences of Glyma05g34090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g34090.1 sequence type=CDS gene model=Glyma05g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGATGGAAGCAACGGGGGAGTTCTAATGCTGGAAGCCCCACCGTCTTACGGTAGGCCTACCGGTTCTAACGCGGAAATAATCGACGCATTGCCTTACATTGATGACGACTACGCAGACCCCAGAGTCAAACTTGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAAAGATTTCCCTCCTCTTCCCAACTCCAATTTCCAGCAGAACTACCCAATGATTGCGAGAGAGTACGAACGTGTGAGAGCCGGAAGACCTCCCGTTGCTCTTGATAGATCGCGCTACGAATTGGAAATGCCGCCGGCGAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACACCTGCTGCAATATCAGATTATGAGGATGGAAAATTTGGATTTGATGTTAAAATATGGTCCCGATACCTGGAAACAACACAACCAAAGATTGGAAGTATACTTATCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAATTGAAAAGAGGAGCAGCAGAAAGAGGCTGGAACTTGGAAGCTGTAACTGAAAATGGCCAATTGGCAAAATCCGAATTATGA
>Glyma05g34090.2 sequence type=CDS gene model=Glyma05g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGATGGAAGCAACGGGGGAGTTCTAATGCTGGAAGCCCCACCGTCTTACGGTAGGCCTACCGGTTCTAACGCGGAAATAATCGACGCATTGCCTTACATTGATGACGACTACGCAGACCCCAGAGTCAAACTTGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAAAGATTTCCCTCCTCTTCCCAACTCCAATTTCCAGAACTACCCAATGATTGCGAGAGAGTACGAACGTGTGAGAGCCGGAAGACCTCCCGTTGCTCTTGATAGATCGCGCTACGAATTGGAAATGCCGCCGGCGAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACACCTGCTGCAATATCAGATTATGAGGATGGAAAATTTGGATTTGATGTTAAAATATGGTCCCGATACCTGGAAACAACACAACCAAAGATTGGAAGTATACTTATCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAATTGAAAAGAGGAGCAGCAGAAAGAGGCTGGAACTTGGAAGCTGTAACTGAAAATGGCCAATTGGCAAAATCCGAATTATGA
Predicted protein sequences of Glyma05g34090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g34090.1 sequence type=predicted peptide gene model=Glyma05g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADGSNGGVLMLEAPPSYGRPTGSNAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLKDFPPLPNSNFQQNYPMIAREYERVRAGRPPVALDRSRYELEMPPANKRNDETAWKQALHRAQHLLQYQIMRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKRGAAERGWNLEAVTENGQLAKSEL*
>Glyma05g34090.2 sequence type=predicted peptide gene model=Glyma05g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADGSNGGVLMLEAPPSYGRPTGSNAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLKDFPPLPNSNFQNYPMIAREYERVRAGRPPVALDRSRYELEMPPANKRNDETAWKQALHRAQHLLQYQIMRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKRGAAERGWNLEAVTENGQLAKSEL*