Glyma05g34080 - SoyBase

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Report for Sequence Feature Glyma05g34080

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38516622
stop:	38523109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g34080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48635	AT	Annotation by Michelle Graham. TAIR10: peroxin 3 \| chr1:17983951-17985966 FORWARD LENGTH=364	SoyBase	E_val: 4.00E-149	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005779	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to peroxisomal membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4444	KOG	Peroxisomal assembly protein PEX3	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR22950:SF1	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF04882	PFAM	Peroxin-3	JGI		ISS
UniRef100_B9SU93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9SU93_RICCO	SoyBase	E_val: 8.00E-160	ISS
UniRef100_I1K5E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5E7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g34080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34080

Paralog	Evidence	Comments
Glyma08g05600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g243700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g34080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g34080

Limit To All Plant Sequences

>Glyma05g34080.1   sequence type=CDS   gene model=Glyma05g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCTGTGAGGGATTTTTGGAGGCGGCATAGGAGGAAGGTTTTCGTCACTGTTGGTGTTTTAGGAAGTGGGTATCTTTTGTATAAGCTCTACGGTGCTCACAGGCATGGGGTTCAGGAACTTGAAAGAGAACTCGCAGTTCAGAGGGAAACTGAGGAGCTTATGAAGGCTCAGATGCAAGCTCACTTTGAGAATATTCAGAGGATGTCTGATGTAACATTGCCGCATGCTATGCACGAGTTAAGTTGTCGGATCACAGAAGAGTTGGATCTTTCTCACCTTCTTGAAAGGTTAATACAAGGAAAGGGTCAACCAAACACCTTAACCCAATCAGAGAAACTAGATTTATGGAGTAGACTCAAAATTCTAAGTTTTACAAGAATGACATTGTCAGTATGGGCTACAACAATGCTTAGCTTATATACAAAAGTTCAAGTCAATATACTAGGAAGGCATTTATACATTGATACAGCACGAAGCCTTGGAATCTCTGATTCAGTAGAAAGTGGAGATGTGGTCGATAGGGAGGACCAGAAGAAATTTCTAGATAGTGTTGATTTTCTCTCTCAGCATGGTATGCCTGCCTTGATTTCTGATATGGAAGCAGCAACAAAAGAAGTTCTCAAAGGAAAGCAGTTGAGTACTTTCTTCAACAGCACAACGCTTCATGAAACTATCATGCAGATACTCAACACCTTCATGAGCATGGGGACTCCAAATTCCTGGATAAAGTATATGATACCTGAAGATGTTAGACCGTATTCCACAACCTCTGGCAGTGATGACCCGGTACCATTTGACGTGACTGAATTTGAACAACTTATGATTGAAGCACGGGCAGTATTATCAAGTGCTGAATTTGGAAGCATTGTAGAGATATCTCTGAAAGCAGTGGTGGATACACTGGTGGAGCTTATGAGGACTAAATTTAGTGGAGGAAGTGTAGCTGAGGGCATGCCGCTGGCCAGAGTGTTGCCTCAAGTTGCACAGATGTGTCCTTTGCTCCTCGGAGAACCCAGCAAAAATCAGTTCATCCAAATCATTAAAAATATACAGGAGGTTGAACTTTTTTTCACTCTCCTCTATGCAAATATGCCACATGAGTAG

Predicted protein sequences of Glyma05g34080

Limit To All Plant Sequences

>Glyma05g34080.1   sequence type=predicted peptide   gene model=Glyma05g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAHRHGVQELERELAVQRETEELMKAQMQAHFENIQRMSDVTLPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWSRLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQKKFLDSVDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNTFMSMGTPNSWIKYMIPEDVRPYSTTSGSDDPVPFDVTEFEQLMIEARAVLSSAEFGSIVEISLKAVVDTLVELMRTKFSGGSVAEGMPLARVLPQVAQMCPLLLGEPSKNQFIQIIKNIQEVELFFTLLYANMPHE*

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