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Report for Sequence Feature Glyma05g34060

Feature Type:gene_model
Chromosome:Gm05
Start:38504732
stop:38510047
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g34060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18060AT Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr3:6183880-6186788 FORWARD LENGTH=609 SoyBaseE_val: 0ISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0030243GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0318 KOG WD40 repeat stress protein/actin interacting protein JGI ISS
PTHR19856Panther WD-REPEATCONTAINING PROTEIN (WDR1) JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_I1K5E5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5E5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q1SN19UniRef Annotation by Michelle Graham. Most informative UniRef hit: 66 kDa stress protein n=1 Tax=Medicago truncatula RepID=Q1SN19_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g34060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g34060
ParalogEvidenceComments
Glyma08g05640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g34060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g243900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g34060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g34060
>Glyma05g34060.1   sequence type=CDS   gene model=Glyma05g34060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCACGAGCTGTTGGAGACGTACGCGTGCATGCCCACGACGGAGCGCGGCCGTGGGATTCTGATCTCCGGCGATGCCAAGTCCAACTCCATCGTCTACACCAACGGCAGATCGGTGGTCATGATGAACCTCCAGAACCCCCTAAACGTGTCCGTGTACGGGGACCACGCCTACCCCGCCACCGTGGCGCGCTTTTCCCCCAACGGCGAGTGGGTGGCCTCCGCCGACGCCTCCGGCTCCGTCAGGATCTGGGGCACGCGAAACGACTTCGTTTTGAAGAAGGAGTTTAGAGTCCTCTCCGCTCGCATCGACGACCTTCAGTGGTCCCCCGATGGTCTCAGAATCGTTGCCTGCGGCGAAGGCAAAGGGAAGTCCTTCGTCCGCGCTTTTATGTGGGATTCGGGGACTAATGTTGGTGAATTCGATGGTCACTCACGTCGGGTTTTGAGTTGTGCTTATAAACCCACGAGGCCTTTTCGCGTTGTCACTTGTGGAGAGGATTTTCTGCTTAACTTTTATGAGGGACCTCCCTTTAGATTTAAGCTGTCTCACAGGGATCATTCAAATTTTGTGAATTGTGTAAGATATTCTCCGGATGGCAGTAAATTTATAAGTGTAAGTTCTGACAAGAAGGGTATCATATTCGATGGAAACAGTGCAGAGAAGATTGGTGAGTTGTCTTCTGAAGGTGGGCATACTGGTAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAGCTGGTGCTGACTGTATCTGCCGACAAGTCTGCAAAAGTATGGGACATTACTGAGGACAATAACGGAAAGGTGAAGAAAACATTGACTTGTCCTGGCACTGGTGGAGTTGAAGACATGCTAGTGGGGTGCCTATGGTTGAATGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATATCTATATTTTTAGCAAGTGATCTTGATAAAGCCCCGACAGCATTTTCTGGACATATGAAAAATGTTTCCTCCTTAACTATTCTTAGAAGTAACCCTAGAGTGCTCTTATCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGAAAAACTACAAAGGAAGGAAAATTCTCAAATCAAATGCTTAGCAGCTGTAGAAGAAGAGATTGTTACATCTGGATTCGATAATAAGATAAGGCGAGTTTCTTTACATGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATAGGAAGTCAACCAAAGGACTTGAGTGTTGCACTTCTTTCTCCTGAACTTGCCCTAGTTTCAATTGATTCAGGAGTTGTCATGTTGCGTGGTGCCAAAATTGTGTCAACCATTAATCTTGGGTTTATTGTGACAGCATCTGCTGTCTCACCTGATGGAAATGAAGCCATTATCGGTGGACAGGATGGTAAATTGCACATATATTCTATTTCTGGCGATACTCTTGTAGAAGAGGCTGTCCTTGAGAAACATAGGGGTGCTATTAGTGTCATACGTTATTCCCCAGACCTTTCAATGTTTGCATCAGGGGATGTCAATCGAGAAGCTATAGTGTGGGACCGTGCCTCCCGAGAGGTGAAGCTGAAGAACATGTTGTACCATACTGCTAGGATAAACTGCCTTGCGTGGTCCCCTGATAGCCTTAGGATTGCTACAGGATCACTTGACACATGTGTCATCATATATGAAGTTTATCAGCCTGCATCTAGTAGAATTACCATAAAGGGTGCTCATTTAGGCGGGGTTTATGGGTTAGCATTTACTGATGAGTATAGTTTGGTTAGCTCTGGTGAGGATGCTTTTATCCGTGTTTGGAGGATAACCCCTCGTTGA
Predicted protein sequences of Glyma05g34060
>Glyma05g34060.1   sequence type=predicted peptide   gene model=Glyma05g34060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHELLETYACMPTTERGRGILISGDAKSNSIVYTNGRSVVMMNLQNPLNVSVYGDHAYPATVARFSPNGEWVASADASGSVRIWGTRNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLLNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFISVSSDKKGIIFDGNSAEKIGELSSEGGHTGSIYAVSWSPDGKLVLTVSADKSAKVWDITEDNNGKVKKTLTCPGTGGVEDMLVGCLWLNDYLVTVSLGGTISIFLASDLDKAPTAFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSEKLQRKENSQIKCLAAVEEEIVTSGFDNKIRRVSLHGDQCGDAEAIDIGSQPKDLSVALLSPELALVSIDSGVVMLRGAKIVSTINLGFIVTASAVSPDGNEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAISVIRYSPDLSMFASGDVNREAIVWDRASREVKLKNMLYHTARINCLAWSPDSLRIATGSLDTCVIIYEVYQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGEDAFIRVWRITPR*






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