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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18100 | AT | Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:6228049-6230110 REVERSE LENGTH=173 | SoyBase | E_val: 3.00E-97 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination | SoyBase | N/A | ISS |
| GO:0046685 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008429 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding | SoyBase | N/A | ISS |
| KOG3346 | KOG | Phosphatidylethanolamine binding protein | JGI | ISS | |
| PTHR11362 | Panther | PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN | JGI | ISS | |
| PF01161 | PFAM | Phosphatidylethanolamine-binding protein | JGI | ISS | |
| UniRef100_E3NYP7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mother of flowering locus T-like protein n=2 Tax=Glycine max RepID=E3NYP7_SOYBN | SoyBase | E_val: 3.00E-136 | ISS |
| UniRef100_E3NYP7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Mother of flowering locus T-like protein n=2 Tax=Glycine max RepID=E3NYP7_SOYBN | SoyBase | E_val: 3.00E-136 | ISS |
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Glyma05g34030 not represented in the dataset |
Glyma05g34030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g244100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g34030.2 sequence type=transcript gene model=Glyma05g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTTACTCTCTGCAAATCCACCAACGTGTCATCCATTGCATGTCCCTGATTTTACGATGGTCCATGCATGATCACAAAATTACAAAATAGAGGTCCCTGATATTTTACCCTTCAGTTTTTTTCTTTTCTTTTTGAGCTATATAAACCCTACCCTATACACTGTAAGCAACCACCAGAAACTCTCACTAGCTTAGTTTCTATATATGCGTTATTTGTCTCTGAGTACTTTTTCTCTCTTGTGCATTACCTTTGTGGTCATGGCAGCCTCCGTGGATCCCCTAGTGGTTGGTCGCGTGATCGGCGATGTGGTAGACATGTTCATTCCTTCAGTCAACATGTCCGTTTACTTTGGGTCGAAGCACGTCACAAATGGCTGTGACATCAAGCCATCCATTGCCATCAGCCCTCCTAAGCTCACCCTCACCGGCAACATGGATAACCTCTACACACTGGTTATGACTGATCCTGACGCACCTAGCCCCAGTGAACCAAGCATGCGCGAGTGGATACATTGGATCTTAGTTGACATACCTGGAGGAACAAACCCATTTCGCGGTAGTAAAAGAAATCTTTTGGTCTACTTCATATATGACATTTTTATTTTCTTCTATTTATAAAAGTTTCATGATGTTGCATGCATGAGTACTACTGGGTTCAGTTCTACTTAATTAATTTTTCTTTTCTTCGGGCTAAAACATCATGTTTTTTAATTTTTTGGGCGTCCATCGCACTGACTCTCGATTTCAGAAACATTTTTCTTCACTGGTCATAAAAATCTTAGGCCATTTCTGGCAAAATCAACATGCATGTTCCTACCTAGGCTCCTCGCATGCATGTTTCAGATTTCTTCTGGAAAAAAAAATCACAGAATTTCAGGGCTATGTCACATCTTGTGTGCACACTCTCTTTCTATACATCAAATGGTACTCTCACACCTGTGATCTACCAAAATTTGGATCCAATGTCCACCAT
>Glyma05g34030.1 sequence type=CDS gene model=Glyma05g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTATTTGTCTCTGAGTACTTTTTCTCTCTTGTGCATTACCTTTGTGGTCATGGCAGCCTCCGTGGATCCCCTAGTGGTTGGTCGCGTGATCGGCGATGTGGTAGACATGTTCATTCCTTCAGTCAACATGTCCGTTTACTTTGGGTCGAAGCACGTCACAAATGGCTGTGACATCAAGCCATCCATTGCCATCAGCCCTCCTAAGCTCACCCTCACCGGCAACATGGATAACCTCTACACACTGGTTATGACTGATCCTGACGCACCTAGCCCCAGTGAACCAAGCATGCGCGAGTGGATACATTGGATCTTAGTTGACATACCTGGAGGAACAAACCCATTTCGCGGAAAAGAGATTGTTTCATATGTGGGACCAAGACCACCTATTGGAATACATCGCTATATCTTTGTGTTGTTTCAACAGAAAGGACCTTTAGGTCTTGTGGAGCAACCACCAACTCGAGCAAGCTTCAACACTCGTTATTTTGCCAGGCAATTGGACTTGGGACTTCCAGTGGCCACTGTCTACTTCAACTCTCAAAAAGAACCTGCTGTTAAGAGGCGCTGA >Glyma05g34030.2 sequence type=CDS gene model=Glyma05g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTATTTGTCTCTGAGTACTTTTTCTCTCTTGTGCATTACCTTTGTGGTCATGGCAGCCTCCGTGGATCCCCTAGTGGTTGGTCGCGTGATCGGCGATGTGGTAGACATGTTCATTCCTTCAGTCAACATGTCCGTTTACTTTGGGTCGAAGCACGTCACAAATGGCTGTGACATCAAGCCATCCATTGCCATCAGCCCTCCTAAGCTCACCCTCACCGGCAACATGGATAACCTCTACACACTGGTTATGACTGATCCTGACGCACCTAGCCCCAGTGAACCAAGCATGCGCGAGTGGATACATTGGATCTTAGTTGACATACCTGGAGGAACAAACCCATTTCGCGGTAGTAAAAGAAATCTTTTGGTCTACTTCATATATGACATTTTTATTTTCTTCTATTTATAA
>Glyma05g34030.1 sequence type=predicted peptide gene model=Glyma05g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRYLSLSTFSLLCITFVVMAASVDPLVVGRVIGDVVDMFIPSVNMSVYFGSKHVTNGCDIKPSIAISPPKLTLTGNMDNLYTLVMTDPDAPSPSEPSMREWIHWILVDIPGGTNPFRGKEIVSYVGPRPPIGIHRYIFVLFQQKGPLGLVEQPPTRASFNTRYFARQLDLGLPVATVYFNSQKEPAVKRR* >Glyma05g34030.2 sequence type=predicted peptide gene model=Glyma05g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRYLSLSTFSLLCITFVVMAASVDPLVVGRVIGDVVDMFIPSVNMSVYFGSKHVTNGCDIKPSIAISPPKLTLTGNMDNLYTLVMTDPDAPSPSEPSMREWIHWILVDIPGGTNPFRGSKRNLLVYFIYDIFIFFYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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