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Report for Sequence Feature Glyma05g33920

Feature Type:gene_model
Chromosome:Gm05
Start:38426007
stop:38428252
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g33920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18170AT Annotation by Michelle Graham. TAIR10: FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:6254291-6255507 FORWARD LENGTH=247 SoyBaseE_val: 4.00E-91ISS
GO:0000413GO-bp Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0018208GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
GO:0005528GO-mf Annotation by Michelle Graham. GO Molecular Function: FK506 binding SoyBaseN/AISS
KOG0552 KOG FKBP-type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR10516Panther FK506 BINDING PROTEIN JGI ISS
PTHR10516:SF122Panther IMMUNOPHILIN / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS JGI ISS
PF00254PFAM FKBP-type peptidyl-prolyl cis-trans isomerase JGI ISS
UniRef100_I1K5D1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1K5D1_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1K5D1UniRef Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1K5D1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g33920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33920
ParalogEvidenceComments
Glyma08g05730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g245200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g33920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g33920
>Glyma05g33920.1   sequence type=CDS   gene model=Glyma05g33920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTTCTTTGGTTCCCCACCAATTTTCTCCCTCCCCCCTACTATTATTAGAACTCATCACATTTCTTCATCATCACAAACTCCACCACCAACACCTTCACCACAATCTCAGCCTCCAACTTCGTCTCCACAGCAGCTAAGAACAACAAATTTGAATGAGGAATCAGTGCAAGTGTCCACTGAAGCTAAGCAACAGAAGCCCATCAAACCAGTCACTTCATCCACTAAGGTTGGATCCACGGATTGGATAGCCACTTCCTTGACCAGAAGGTTTGGGATAGGAGCTGGTCTTGCATGGGTTGGCTTTCTTGCATTTGGTGTCATCTCAGAACAAATCAAGACTCGCCTTGAGCTGTCTCAGCAAGAGGCAAATACAAGGAACGTTGAGAAGGTGGAAGAGGTGGTGCTTCCTAATGGCATAAGGTACTATGAGTTGAAACTTGGTGGTGGCGCTTCACCAAGGCCGGGAGATTTGGTTGTGATTGATATCATGGGAAAAATTGAAAGTAGTGAAGTGTTTGTAGACACATTTGAGGGGGACAAGAAACCATTGGCTCTAGTGATGGGGTCAAGGCCATATAGTAAGGGAGTCTGTGAAGGTATAGAATATGCACTTAAAACTATGAAGGCTGGAGGCAAGAGGAAGGTAATAGTCCCTCCTAAATTGGGGTTTGGAGAGAATGGTGCTGACTTAGGCACTGGTGTGCAAATTCCTCCACTTGCAACACTTGAATACATTCTAGAGGTTGAAAAAGTCTCCATTGCACCCGCTTAA
Predicted protein sequences of Glyma05g33920
>Glyma05g33920.1   sequence type=predicted peptide   gene model=Glyma05g33920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAFFGSPPIFSLPPTIIRTHHISSSSQTPPPTPSPQSQPPTSSPQQLRTTNLNEESVQVSTEAKQQKPIKPVTSSTKVGSTDWIATSLTRRFGIGAGLAWVGFLAFGVISEQIKTRLELSQQEANTRNVEKVEEVVLPNGIRYYELKLGGGASPRPGDLVVIDIMGKIESSEVFVDTFEGDKKPLALVMGSRPYSKGVCEGIEYALKTMKAGGKRKVIVPPKLGFGENGADLGTGVQIPPLATLEYILEVEKVSIAPA*






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