Glyma05g33890 - SoyBase

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Report for Sequence Feature Glyma05g33890

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38401836
stop:	38405077
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18035	AT	Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein \| chr3:6169384-6171558 REVERSE LENGTH=480	SoyBase	E_val: 7.00E-35	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG4012	KOG	Histone H1	JGI		ISS
PTHR11467	Panther	HISTONE H1/H5	JGI		ISS
PF00538	PFAM	linker histone H1 and H5 family	JGI		ISS
UniRef100_I1K5C7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5C7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93YH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HMG I/Y like protein n=1 Tax=Glycine max RepID=Q93YH8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g33890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33890

Paralog	Evidence	Comments
Glyma08g05710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g245500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g33890

Limit To All Plant Sequences

>Glyma05g33890.2   sequence type=transcript   gene model=Glyma05g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATATATAAAAAAAGGAACGAAAGCGCTAGCATGAGGCAGTTAAAAAGTTTTAGAAAGAATGAAGACATAGCTATCCGCAAGAGAAAATCAAGGGCTGACATCATGATGATGTCACTCACAATTCCCAATATGAAAATCAAATGACCTAATCTCTCTCTATTTCCCAAATTTGGAATCTCCTTCCTCTCTCTCTCTGTCTCTCTGTCTCCTCCATGGCCATCTCCTTCAGTCCCAAACACCCTCCTTACGATGAGATGATATACACAGCAATCGGAGCTCTGAAGGAGAGGGATGGTTCGAGCAAGCGAGCCATAGGAAAGTACATAGAACAAGTCTACAAGGACCTTCCACCCACTCACCCTGCTTTGTTGACTCACCATCTCAACCGATTGAAATCCTCTGCCCTCCTCGTCCTCGTCAAGAAATCCTACAAGCTTCCTGGATCTCATCATCTGCCTGCGCTCCAGCCCCAAAAGACCCGTGGTCGTCCTCCCAAGCCCAAGCCCCACCCCGTCTGGCCTGCTGCAGCCCTCACCGACAGCCCTGCTCTTCTATCCGCCAAAAGAGGCCCCGGTCGTCCTAAAAAGATTGGTGTCAGCCCGCCAGGCCCAAGGGGTCGTCCACCCGGGACTGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCCCCCAAGCCCAAATCCGTCTCGGCGATCTCCAGTGGTCTCAAACGACGTCCTGGACGCCCACCCAAAGCCCAATCCAACGTAAACGTCATCCCCTTCGCAGCCCCAGTTGCTCCCGGCCTGCCTACTGTGCAGCCCATCCTTCCTACTGCTTCCGTGCCCAATGGATCTCCCAGGCCCCGAGGAAGGCCTAAAAAGAGTTTTACTGCTGCGGGGGCTCCGGCGCTATCTGCCGTTGCCGGTGCAGCGCGTGGTCGTGGCCGCGGACGTCCACGTGGGGTCTTCCCGGTGGTTAGGCCCGGCCGGCCTCAGAAGCTCGCCGTAGGAAGGTCCAAGAATCCTGTAAGAAGGCCCGTGGGCCGCCCCAAGGGATCGACAGCTGCTGCAATCACAGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTGTGAGTTGAAATAGTCTTCCGTTTGAATGTTTATCATATTTCATAATTCATAGGTCTTATATTTGATGCCCCCATTGTTTAATTTACAGCAATCAAAAGTGAAGGAGTCCCTTGGCACGCTTAAGCCTTATTTTAACCATGAAAGCCCAGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCGCCATTGAGGGATGAGACCCAGCAACAGCCACCGCCACTGCCACAGACACAGACACAGGTGTATGAACAGCAATATCCCCAGCCACAGTCACAGCAGCTGCCGCAATTTTTTCAACCACATACATCAGCCCCGAGCTAGGCCTGAACATGATGAAGGACAACTTGTACAAGTGTTATTAACAAGGCACAAGAGGTAAAAGATCTGTAAAGCGGTTAGGAAGTAGTGGTACTGATTTTTCTGAGGGTGAAATGACTCTGTCTATTTTAGTTTGTTGTTGTGCAACATTTAGTTTGACCCCTGAAGTGATTAGCGGGTACTCATGATTCTGTTGTTCTTTAAGTAATATTTATTTGACTTTTACAGTTTACTTTAGTCACATTAATGTGTATGTTTGTATCAGCCTCTTTTGTTGTTTAATATTTTTAATTAATGGTTACTGCTTGCTATTTCTCATTAATCATTATTGAGTGGTTGTGTGAACTCTATTTCGTTATTGAGCGGTCGCCCCTTACTACTGTTGGA

Coding sequences of Glyma05g33890

Limit To All Plant Sequences

>Glyma05g33890.1   sequence type=CDS   gene model=Glyma05g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCCTTCAGTCCCAAACACCCTCCTTACGATGAGATGATATACACAGCAATCGGAGCTCTGAAGGAGAGGGATGGTTCGAGCAAGCGAGCCATAGGAAAGTACATAGAACAAGTCTACAAGGACCTTCCACCCACTCACCCTGCTTTGTTGACTCACCATCTCAACCGATTGAAATCCTCTGCCCTCCTCGTCCTCGTCAAGAAATCCTACAAGCTTCCTGGATCTCATCATCTGCCTGCGCTCCAGCCCCAAAAGACCCGTGGTCGTCCTCCCAAGCCCAAGCCCCACCCCGTCTGGCCTGCTGCAGCCCTCACCGACAGCCCTGCTCTTCTATCCGCCAAAAGAGGCCCCGGTCGTCCTAAAAAGATTGGTGTCAGCCCGCCAGGCCCAAGGGGTCGTCCACCCGGGACTGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCCCCCAAGCCCAAATCCGTCTCGGCGATCTCCAGTGGTCTCAAACGACGTCCTGGACGCCCACCCAAAGCCCAATCCAACGTAAACGTCATCCCCTTCGCAGCCCCAGTTGCTCCCGGCCTGCCTACTGTGCAGCCCATCCTTCCTACTGCTTCCGTGCCCAATGGATCTCCCAGGCCCCGAGGAAGGCCTAAAAAGAGTTTTACTGCTGCGGGGGCTCCGGCGCTATCTGCCGTTGCCGGTGCAGCGCGTGGTCGTGGCCGCGGACGTCCACGTGGGGTCTTCCCGGTGGTTAGGCCCGGCCGGCCTCAGAAGCTCGCCGTAGGAAGGTCCAAGAATCCTGTAAGAAGGCCCGTGGGCCGCCCCAAGGGATCGACAGCTGCTGCAATCACAGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAATCAAAAGTGAAGGAGTCCCTTGGCACGCTTAAGCCTTATTTTAACCATGAAAGCCCAGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCGCCATTGAGGGATGAGACCCAGCAACAGCCACCGCCACTGCCACAGACACAGACACAGGTGTATGAACAGCAATATCCCCAGCCACAGTCACAGCAGCTGCCGCAATTTTTTCAACCACATACATCAGCCCCGAGCTAG

>Glyma05g33890.2   sequence type=CDS   gene model=Glyma05g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCCTTCAGTCCCAAACACCCTCCTTACGATGAGATGATATACACAGCAATCGGAGCTCTGAAGGAGAGGGATGGTTCGAGCAAGCGAGCCATAGGAAAGTACATAGAACAAGTCTACAAGGACCTTCCACCCACTCACCCTGCTTTGTTGACTCACCATCTCAACCGATTGAAATCCTCTGCCCTCCTCGTCCTCGTCAAGAAATCCTACAAGCTTCCTGGATCTCATCATCTGCCTGCGCTCCAGCCCCAAAAGACCCGTGGTCGTCCTCCCAAGCCCAAGCCCCACCCCGTCTGGCCTGCTGCAGCCCTCACCGACAGCCCTGCTCTTCTATCCGCCAAAAGAGGCCCCGGTCGTCCTAAAAAGATTGGTGTCAGCCCGCCAGGCCCAAGGGGTCGTCCACCCGGGACTGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCCCCCAAGCCCAAATCCGTCTCGGCGATCTCCAGTGGTCTCAAACGACGTCCTGGACGCCCACCCAAAGCCCAATCCAACGTAAACGTCATCCCCTTCGCAGCCCCAGTTGCTCCCGGCCTGCCTACTGTGCAGCCCATCCTTCCTACTGCTTCCGTGCCCAATGGATCTCCCAGGCCCCGAGGAAGGCCTAAAAAGAGTTTTACTGCTGCGGGGGCTCCGGCGCTATCTGCCGTTGCCGGTGCAGCGCGTGGTCGTGGCCGCGGACGTCCACGTGGGGTCTTCCCGGTGGTTAGGCCCGGCCGGCCTCAGAAGCTCGCCGTAGGAAGGTCCAAGAATCCTGTAAGAAGGCCCGTGGGCCGCCCCAAGGGATCGACAGCTGCTGCAATCACAGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTGTGAGTTGA

Predicted protein sequences of Glyma05g33890

Limit To All Plant Sequences

>Glyma05g33890.1   sequence type=predicted peptide   gene model=Glyma05g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISFSPKHPPYDEMIYTAIGALKERDGSSKRAIGKYIEQVYKDLPPTHPALLTHHLNRLKSSALLVLVKKSYKLPGSHHLPALQPQKTRGRPPKPKPHPVWPAAALTDSPALLSAKRGPGRPKKIGVSPPGPRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAQSNVNVIPFAAPVAPGLPTVQPILPTASVPNGSPRPRGRPKKSFTAAGAPALSAVAGAARGRGRGRPRGVFPVVRPGRPQKLAVGRSKNPVRRPVGRPKGSTAAAITAHKAANEDLRKKLEHFQSKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETQQQPPPLPQTQTQVYEQQYPQPQSQQLPQFFQPHTSAPS*

>Glyma05g33890.2   sequence type=predicted peptide   gene model=Glyma05g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISFSPKHPPYDEMIYTAIGALKERDGSSKRAIGKYIEQVYKDLPPTHPALLTHHLNRLKSSALLVLVKKSYKLPGSHHLPALQPQKTRGRPPKPKPHPVWPAAALTDSPALLSAKRGPGRPKKIGVSPPGPRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAQSNVNVIPFAAPVAPGLPTVQPILPTASVPNGSPRPRGRPKKSFTAAGAPALSAVAGAARGRGRGRPRGVFPVVRPGRPQKLAVGRSKNPVRRPVGRPKGSTAAAITAHKAANEDLRKKLEHFVS*

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