Glyma05g33790 - SoyBase

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Report for Sequence Feature Glyma05g33790

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38337126
stop:	38341410
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18000	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:6154578-6157331 FORWARD LENGTH=491	SoyBase	E_val: 0	ISS
GO:0006656	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylcholine biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010183	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube guidance	SoyBase	N/A	ISS
GO:0042425	GO-bp	Annotation by Michelle Graham. GO Biological Process: choline biosynthetic process	SoyBase	N/A	ISS
GO:0048528	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic root development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoethanolamine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
KOG1269	KOG	SAM-dependent methyltransferases	JGI		ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF328	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_G7KPT7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoethanolamine N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7KPT7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K5B7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5B7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g33790

Locus	Gene Symbol	Protein Name
	PEAMT1	Phosphoethanolamine methyltransferase 1

Expression Patterns of Glyma05g33790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g33790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g246500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g33790

Limit To All Plant Sequences

>Glyma05g33790.2   sequence type=transcript   gene model=Glyma05g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAGGAGAAGGGGGAGTAGGGATAGGGAGGGTAATGTAATGTAATGCAGCAAAGAGGGAAAGGTAACAACCGTAGATCCAGGAGTTTCTCAAGGTCCCGTCTCGCTGTTGAAGGCACTTAGCCACACACACACACCCACCGCTTTCAGCTATGGATGAGCGTCACATTCAGAAATCTTACTGGCTTCAGCATTCCGCCGATCTCTCCGTCGAGGCAATGATGCTCGATTCCAAAGCCGCTCATCTCGACAAAGAAGAGAGACCCGAGGTGCTTTCCCTATTACCTCCATTCGAAGGCAAGTCCGTTATTGAGCTTGGTGCTGGTATTGGTCGATTTACTGGTGAATTGGCTCTGAAAGCTGGTCAATTGCTTGCTGTGGACTTCATTGACACTGCTATCAAGAAGAATGAAACCATCAATGGACACCACAACCATGTCAAATTCTTGTGTGCTGATGTCACATCTCCAAATATGTCAAATAACGTTTCTGAAGGATCCGTTGACGTCGTTTTCTCAAATTGGTTACTTATGTATCTCTCAGATATTGAGGTTGAAAAATTAGCTGAAAGGATGGTCAGATGGTTAAAAGATGGTGGATATATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAACCCTACTCACTACAGGGAACCCAGATTTTATACCAAGGTATTTAAAGAGTGCCATATGAGTGATAATACTGGGAATTCCTTTGAGCTTTCTCTTGTGGGATGTAAATGCATTGGAGCTTATGTTCGAAATAAGAAGAATCAAAACCAGATTTGCTGGATATGGCAGAAAGTTAGGTCACAAGATGATAGGGGTTTCCAGCGCTTCTTGGATAGAGTTGAATACAGCCACAAGAGTATTTTACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGAGAATTTTGATGTTGAGGTTATTGGCATTGACCTCTCCATAAACATGATTTCTCTTGCTATTGAACGTGCTATTGGACTGAACTACGCTGTTGAATTTGATTGTGCGGATTGCTATAGAAAAACATATCCTGAGAATACATTTGATGTAATATACACTCGGGACACCATGCTGCACGTCAAAGATAAACCAACATTATTCAGATCATTTTACAAGTGGTTGAAGCCTGGAGGAAAAATTCTAATCACAGATTACTGCAAAAGTGCTGGAAGTCCATCTTTAGAATTTGCTGAGTACATAAAAAAAGGAGGATATTATCTCCATGACATTAAAGCGTATAGGCAGATGCTTGAGGATGCGGGATTTGATGATGTCATTGCCGAGGATCGAACTGATCAGTTTGTGAACACGCTACAGCAGGAGTTAAATGCCCTTGAGAACAAGAAGGACGATTTTATTGGTGACTTCAGCGAGGTGGGTTTGTTACTTTCTCATTATGATTTGAAGATAGTTTTGTGAGACCGTATTTTATGGCAGTTGTTTCTCTGTTAAAATCATTCACGGCTTTCAGGAAGACTACAATGAGATTGTCGAAAGATGGAAGGCAAAGCAGACCAGGGGTGCATCTAGAGAGCAGATGTGGGGCTTGTTCATTGCCAAGAAAAATTGACATGCTTTATTGCTATCATATGCCTTGTTCTAGCTATATTTAATTCCTGTGTGGCCGGAATAGTTATCTGTGTCTTTTATGTTGGTTTAAGATTCATAGCTGCTTTCGAATTAGAATGACGATCTGCTGAGAGGAGAATGCTCTTCGATTTGAATAACAATGGTCACTTGCCATTGGCTTCCTTGCTAAAAAATAATTTCAACGTCTTGGTTTTTGGTTTGAATATTTGGTAAATTTGCCATAACAATTGTTCCCCTCATTTGGAATTTGAGAAGAAAACTCTTGGCCCCCTCATTTTATTTTCCTCCCCCTCGTTAGAAAACTAACAGT

Coding sequences of Glyma05g33790

Limit To All Plant Sequences

>Glyma05g33790.1   sequence type=CDS   gene model=Glyma05g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGCGTCACATTCAGAAATCTTACTGGCTTCAGCATTCCGCCGATCTCTCCGTCGAGGCAATGATGCTCGATTCCAAAGCCGCTCATCTCGACAAAGAAGAGAGACCCGAGGTGCTTTCCCTATTACCTCCATTCGAAGGCAAGTCCGTTATTGAGCTTGGTGCTGGTATTGGTCGATTTACTGGTGAATTGGCTCTGAAAGCTGGTCAATTGCTTGCTGTGGACTTCATTGACACTGCTATCAAGAAGAATGAAACCATCAATGGACACCACAACCATGTCAAATTCTTGTGTGCTGATGTCACATCTCCAAATATGTCAAATAACGTTTCTGAAGGATCCGTTGACGTCGTTTTCTCAAATTGGTTACTTATGTATCTCTCAGATATTGAGGTTGAAAAATTAGCTGAAAGGATGGTCAGATGGTTAAAAGATGGTGGATATATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAACCCTACTCACTACAGGGAACCCAGATTTTATACCAAGGTATTTAAAGAGTGCCATATGAGTGATAATACTGGGAATTCCTTTGAGCTTTCTCTTGTGGGATGTAAATGCATTGGAGCTTATGTTCGAAATAAGAAGAATCAAAACCAGATTTGCTGGATATGGCAGAAAGTTAGGTCACAAGATGATAGGGGTTTCCAGCGCTTCTTGGATAGAGTTGAATACAGCCACAAGAGTATTTTACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGAGAATTTTGATGTTGAGGTTATTGGCATTGACCTCTCCATAAACATGATTTCTCTTGCTATTGAACGTGCTATTGGACTGAACTACGCTGTTGAATTTGATTGTGCGGATTGCTATAGAAAAACATATCCTGAGAATACATTTGATGTAATATACACTCGGGACACCATGCTGCACGTCAAAGATAAACCAACATTATTCAGATCATTTTACAAGTGGTTGAAGCCTGGAGGAAAAATTCTAATCACAGATTACTGCAAAAGTGCTGGAAGTCCATCTTTAGAATTTGCTGAGTACATAAAAAAAGGAGGATATTATCTCCATGACATTAAAGCGTATAGGCAGATGCTTGAGGATGCGGGATTTGATGATGTCATTGCCGAGGATCGAACTGATCAGTTTGTGAACACGCTACAGCAGGAGTTAAATGCCCTTGAGAACAAGAAGGACGATTTTATTGGTGACTTCAGCGAGGAAGACTACAATGAGATTGTCGAAAGATGGAAGGCAAAGCAGACCAGGGGTGCATCTAGAGAGCAGATGTGGGGCTTGTTCATTGCCAAGAAAAATTGA

>Glyma05g33790.2   sequence type=CDS   gene model=Glyma05g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGCGTCACATTCAGAAATCTTACTGGCTTCAGCATTCCGCCGATCTCTCCGTCGAGGCAATGATGCTCGATTCCAAAGCCGCTCATCTCGACAAAGAAGAGAGACCCGAGGTGCTTTCCCTATTACCTCCATTCGAAGGCAAGTCCGTTATTGAGCTTGGTGCTGGTATTGGTCGATTTACTGGTGAATTGGCTCTGAAAGCTGGTCAATTGCTTGCTGTGGACTTCATTGACACTGCTATCAAGAAGAATGAAACCATCAATGGACACCACAACCATGTCAAATTCTTGTGTGCTGATGTCACATCTCCAAATATGTCAAATAACGTTTCTGAAGGATCCGTTGACGTCGTTTTCTCAAATTGGTTACTTATGTATCTCTCAGATATTGAGGTTGAAAAATTAGCTGAAAGGATGGTCAGATGGTTAAAAGATGGTGGATATATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAACCCTACTCACTACAGGGAACCCAGATTTTATACCAAGGTATTTAAAGAGTGCCATATGAGTGATAATACTGGGAATTCCTTTGAGCTTTCTCTTGTGGGATGTAAATGCATTGGAGCTTATGTTCGAAATAAGAAGAATCAAAACCAGATTTGCTGGATATGGCAGAAAGTTAGGTCACAAGATGATAGGGGTTTCCAGCGCTTCTTGGATAGAGTTGAATACAGCCACAAGAGTATTTTACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGAGAATTTTGATGTTGAGGTTATTGGCATTGACCTCTCCATAAACATGATTTCTCTTGCTATTGAACGTGCTATTGGACTGAACTACGCTGTTGAATTTGATTGTGCGGATTGCTATAGAAAAACATATCCTGAGAATACATTTGATGTAATATACACTCGGGACACCATGCTGCACGTCAAAGATAAACCAACATTATTCAGATCATTTTACAAGTGGTTGAAGCCTGGAGGAAAAATTCTAATCACAGATTACTGCAAAAGTGCTGGAAGTCCATCTTTAGAATTTGCTGAGTACATAAAAAAAGGAGGATATTATCTCCATGACATTAAAGCGTATAGGCAGATGCTTGAGGATGCGGGATTTGATGATGTCATTGCCGAGGATCGAACTGATCAGTTTGTGAACACGCTACAGCAGGAGTTAAATGCCCTTGAGAACAAGAAGGACGATTTTATTGGTGACTTCAGCGAGGTGGGTTTGTTACTTTCTCATTATGATTTGAAGATAGTTTTGTGA

Predicted protein sequences of Glyma05g33790

Limit To All Plant Sequences

>Glyma05g33790.1   sequence type=predicted peptide   gene model=Glyma05g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDERHIQKSYWLQHSADLSVEAMMLDSKAAHLDKEERPEVLSLLPPFEGKSVIELGAGIGRFTGELALKAGQLLAVDFIDTAIKKNETINGHHNHVKFLCADVTSPNMSNNVSEGSVDVVFSNWLLMYLSDIEVEKLAERMVRWLKDGGYIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHMSDNTGNSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVRSQDDRGFQRFLDRVEYSHKSILRYERMYGPGFVSTGGLETTKEFVAKLGLKPGQKVLDVGCGVGGGDFYMAENFDVEVIGIDLSINMISLAIERAIGLNYAVEFDCADCYRKTYPENTFDVIYTRDTMLHVKDKPTLFRSFYKWLKPGGKILITDYCKSAGSPSLEFAEYIKKGGYYLHDIKAYRQMLEDAGFDDVIAEDRTDQFVNTLQQELNALENKKDDFIGDFSEEDYNEIVERWKAKQTRGASREQMWGLFIAKKN*

>Glyma05g33790.2   sequence type=predicted peptide   gene model=Glyma05g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDERHIQKSYWLQHSADLSVEAMMLDSKAAHLDKEERPEVLSLLPPFEGKSVIELGAGIGRFTGELALKAGQLLAVDFIDTAIKKNETINGHHNHVKFLCADVTSPNMSNNVSEGSVDVVFSNWLLMYLSDIEVEKLAERMVRWLKDGGYIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHMSDNTGNSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVRSQDDRGFQRFLDRVEYSHKSILRYERMYGPGFVSTGGLETTKEFVAKLGLKPGQKVLDVGCGVGGGDFYMAENFDVEVIGIDLSINMISLAIERAIGLNYAVEFDCADCYRKTYPENTFDVIYTRDTMLHVKDKPTLFRSFYKWLKPGGKILITDYCKSAGSPSLEFAEYIKKGGYYLHDIKAYRQMLEDAGFDDVIAEDRTDQFVNTLQQELNALENKKDDFIGDFSEVGLLLSHYDLKIVL*

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