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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17880 | AT | Annotation by Michelle Graham. TAIR10: tetraticopeptide domain-containing thioredoxin | chr3:6123534-6126113 FORWARD LENGTH=373 | SoyBase | E_val: 3.00E-98 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0051259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein oligomerization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| GO:0030544 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Hsp70 protein binding | SoyBase | N/A | ISS |
| KOG0907 | KOG | Thioredoxin | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PTHR22904:SF34 | Panther | HSC70-INTERACTING PROTEIN | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| UniRef100_B9SXR7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hsc70-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9SXR7_RICCO | SoyBase | E_val: 4.00E-109 | ISS |
| UniRef100_UPI000233A856 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A856 related cluster n=1 Tax=unknown RepID=UPI000233A856 | SoyBase | E_val: 3.00E-171 | ISS |
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Glyma05g33711 not represented in the dataset |
Glyma05g33711 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g06010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g247200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g33711.2 sequence type=transcript gene model=Glyma05g33711 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGGAAATCTAAATTTCTTGTTTTCAGCTAGCATCTTTATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAATCCAGACTCAGCCAAAGGATACAAAATACGAGGAATGTCGAGGGCTATGTTGGGACTAAGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTTCGATGAAGAGATTAGTATAGCACTTAAAAAGGTTGAACCTAATGCCAACAAAATTGAGGAGCATAGGAGAAAATGTGAACGCTTAAGAAAACGAAAGGAACAGAAAAGGTCTCCTATTAAGACCGAAACTCCTATCAAGAAGGAGAGCAAGAAACTGAAGCCCAGCTGCTATGAAGCCTGGTATTCCAAAAATGGCAAAATATCAAGATCATACTTGGCTGTATTTGATATGATACATGTAGCATGGTCCTTGATGTGTATCCAAGGAGTTCAAGAAGCATTATCTGCTTTAAAAGATGAGCAAACATCACGCTTGGCGATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTCCCTTATTTATACAAGCTTGGCTGAAAAGTACCCAAAAGTGGTTTTTGTGAAAGTTGACATAGATGAGGCCAGGGACGTTGCTGCAGGCTGGAATATTAGCAGTGTTCCGACATTCTTCTTTGTTAAGAATGGCAAAGAGGTTGACAGTGTGATGGGGGCAGACAAAAGTACCCTTGAAAGCAAGATTGCACAACATGCTGGCTCTCTTTAA
>Glyma05g33711.1 sequence type=CDS gene model=Glyma05g33711 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGAACCAGGTACCGATTTTGATGACAATAATTCAGATCCTCCTTTATCCGCACAAGATGACATTATAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAGCCCGATAATGACCCTCCTCAAAAGATGGGAAATCCTTCTGCTGAAGTAACGGAAGAACAGAGCATCTTTATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAATCCAGACTCAGCCAAAGGATACAAAATACGAGGAATGTCGAGGGCTATGTTGGGACTAAGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTTCGATGAAGAGATTAGTATAGCACTTAAAAAGGTTGAACCTAATGCCAACAAAATTGAGGAGCATAGGAGAAAATGTGAACGCTTAAGAAAACGAAAGGAACAGAAAAGGTCTCCTATTAAGACCGAAACTCCTATCAAGAAGGAGAGCAAGAAACTGAAGCCCAGCTGCTATGAAGCCTGGTATTCCAAAAATGGCAAAATATCAAGATCATACTTGGCTGTATTTGATATGATACATGTAGCATGGTCCTTGATGTGTATCCAAGGAGTTCAAGAAGCATTATCTGCTTTAAAAGATGAGCAAACATCACGCTTGGCGATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTCCCTTATTTATACAAGCTTGGCTGAAAAGTACCCAAAAGTGGTTTTTGTGAAAGTTGACATAGATGAGGCCAGGGACGTTGCTGCAGGCTGGAATATTAGCAGTGTTCCGACATTCTTCTTTGTTAAGAATGGCAAAGAGGTTGACAGTGTGATGGGGGCAGACAAAAGTACCCTTGAAAGCAAGATTGCACAACATGCTGGCTCTCTTTAA >Glyma05g33711.2 sequence type=CDS gene model=Glyma05g33711 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAATCCAGACTCAGCCAAAGGATACAAAATACGAGGAATGTCGAGGGCTATGTTGGGACTAAGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTTCGATGAAGAGATTAGTATAGCACTTAAAAAGGTTGAACCTAATGCCAACAAAATTGAGGAGCATAGGAGAAAATGTGAACGCTTAAGAAAACGAAAGGAACAGAAAAGGTCTCCTATTAAGACCGAAACTCCTATCAAGAAGGAGAGCAAGAAACTGAAGCCCAGCTGCTATGAAGCCTGGTATTCCAAAAATGGCAAAATATCAAGATCATACTTGGCTGTATTTGATATGATACATGTAGCATGGTCCTTGATGTGTATCCAAGGAGTTCAAGAAGCATTATCTGCTTTAAAAGATGAGCAAACATCACGCTTGGCGATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTCCCTTATTTATACAAGCTTGGCTGAAAAGTACCCAAAAGTGGTTTTTGTGAAAGTTGACATAGATGAGGCCAGGGACGTTGCTGCAGGCTGGAATATTAGCAGTGTTCCGACATTCTTCTTTGTTAAGAATGGCAAAGAGGTTGACAGTGTGATGGGGGCAGACAAAAGTACCCTTGAAAGCAAGATTGCACAACATGCTGGCTCTCTTTAA
>Glyma05g33711.1 sequence type=predicted peptide gene model=Glyma05g33711 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLEPGTDFDDNNSDPPLSAQDDIIESDIELDNADVVEPDNDPPQKMGNPSAEVTEEQSIFMKLKKPNAAIRDADTALKINPDSAKGYKIRGMSRAMLGLREEAASDLHVASKLDFDEEISIALKKVEPNANKIEEHRRKCERLRKRKEQKRSPIKTETPIKKESKKLKPSCYEAWYSKNGKISRSYLAVFDMIHVAWSLMCIQGVQEALSALKDEQTSRLAILYFTATWCGPCRFISLIYTSLAEKYPKVVFVKVDIDEARDVAAGWNISSVPTFFFVKNGKEVDSVMGADKSTLESKIAQHAGSL* >Glyma05g33711.2 sequence type=predicted peptide gene model=Glyma05g33711 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLKKPNAAIRDADTALKINPDSAKGYKIRGMSRAMLGLREEAASDLHVASKLDFDEEISIALKKVEPNANKIEEHRRKCERLRKRKEQKRSPIKTETPIKKESKKLKPSCYEAWYSKNGKISRSYLAVFDMIHVAWSLMCIQGVQEALSALKDEQTSRLAILYFTATWCGPCRFISLIYTSLAEKYPKVVFVKVDIDEARDVAAGWNISSVPTFFFVKNGKEVDSVMGADKSTLESKIAQHAGSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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