Glyma05g33590 - SoyBase

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Report for Sequence Feature Glyma05g33590

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38211627
stop:	38213848
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01940	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr2:432652-434917 FORWARD LENGTH=445	SoyBase	E_val: 7.00E-150	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009590	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of gravity	SoyBase	N/A	ISS
GO:0009959	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative gravitropism	SoyBase	N/A	ISS
GO:0010031	GO-bp	Annotation by Michelle Graham. GO Biological Process: circumnutation	SoyBase	N/A	ISS
GO:2000904	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of starch metabolic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2462	KOG	C2H2-type Zn-finger protein	JGI		ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_B9T7S4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7S4_RICCO	SoyBase	E_val: 4.00E-175	ISS
UniRef100_UPI000233A852	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A852 related cluster n=1 Tax=unknown RepID=UPI000233A852	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g33590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33590

Paralog	Evidence	Comments
Glyma08g06130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g248300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g33590

Limit To All Plant Sequences

>Glyma05g33590.1   sequence type=CDS   gene model=Glyma05g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGTAGTCAATAACTCATCTCCCACTTCTGAGGCCGAGAATGGTACTGCTGCTGCCACTAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGCTGTTGAAGAGGGAAACGCCGGTGGTGAAGAAGAGAGTGTTTGTATGCCCGGAGCCTAGTTGTTTGCACCATGACCCATGCCATGCTCTGGGTGATCTTGTTGGAATAAAGAAGCACTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTATGCGGTGCAGTCCGATTACAAAGCACATCTCAAAACTTGTGGCACCCGAGGACACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTCATTGAGCACCAAGACGCGTGCAACGTGGGGAGGTTGGGGCCAGAAACACAGCCACAGCCACAGACACAGACACAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCGAAACCAATTTCAGCAATGGAGCCCCTTGGCCCCAAAGCGGTACTGTAATAATTCCAAAGCCCTCCGTAACAGTATTAGAACCCTCCTCATACTCCAACCCTACTACCACTGCCGAAACCAACATCATCAACGACGTCCACCCCAACCTGGAGCTTCAGCTCTCTACAGCTACTCCTTCATCCAAAGCTAATTATAACCACTCCATACAGACACAGTTGCAGCTATCCATAGGGATAGGGTCCTTGGAAGAGCAGTTGAGGATAGCGATGGCTGAGAAAGCGTTGGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATCGAACTGGCTGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAACAAGCGCTTGCGGAACTTGACAAAGCCTATGCCTTGAAGGACCATGCAATCAAGCACATCAATTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCATTTTCAATCGCCAACCTCCCACGACAACTCTTTCGTCTTCAGCTACATAACACAAGCTCAAAGCCAACTAGAAAAACATCGACTCAAACCCATTATTAACTCTTAA

Predicted protein sequences of Glyma05g33590

Limit To All Plant Sequences

>Glyma05g33590.1   sequence type=predicted peptide   gene model=Glyma05g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVVNNSSPTSEAENGTAAATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQPQPQTQTQAVQAAACLSRTASSETNFSNGAPWPQSGTVIIPKPSVTVLEPSSYSNPTTTAETNIINDVHPNLELQLSTATPSSKANYNHSIQTQLQLSIGIGSLEEQLRIAMAEKALAEEARKQAKRQIELAELEFTNAKRIRQQALAELDKAYALKDHAIKHINSTMLQITCLACKHHFQSPTSHDNSFVFSYITQAQSQLEKHRLKPIINS*

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