Glyma05g33540 - SoyBase

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Report for Sequence Feature Glyma05g33540

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38166833
stop:	38170524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48420	AT	Annotation by Michelle Graham. TAIR10: D-cysteine desulfhydrase \| chr1:17896767-17898803 REVERSE LENGTH=401	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019447	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-cysteine catabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate deaminase activity	SoyBase	N/A	ISS
GO:0019148	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-cysteine desulfhydrase activity	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF6	Panther	THREONINE DEHYDRATASE-RELATED	JGI		ISS
PF00291	PFAM	Pyridoxal-phosphate dependent enzyme	JGI		ISS
UniRef100_G7LE92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: D-cysteine desulfhydrase n=1 Tax=Medicago truncatula RepID=G7LE92_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0000F6CAB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000F6CAB7 related cluster n=1 Tax=unknown RepID=UPI0000F6CAB7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g33540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33540

Paralog	Evidence	Comments
Glyma08g06170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g248600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g33540

Limit To All Plant Sequences

>Glyma05g33540.2   sequence type=transcript   gene model=Glyma05g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTGTTTATGTAAAGAGTTGGAGTAAATATTGGGTGCATTGGGAGGAGATATTTATATTGGGTGCTAGTGAGTGATGGCGATGAGGGTGTGAATTCTAAAAGGAAAGAACAGCTGAGCTGGTCAGAAAATCAATGGCATCATCCTTGGGTTTTGAGTTCCTGACGAAGAAGCCTTACAGTCCTCCATCCTGGGCATCCCATCTCCACCCTTTACCTTCCCACTTCTTCTCTCTTGCCCATGTTTGTTTTATGGAACCTTCCCAATCTGCCCACCAATACCGAGCTGTGGATCAAGCGAGACGACCTTTCCGGAATGCAGCTGAGTGGTAACAAAGTGAGGAAATTGGAGTTCCTGATGGCCGATGCCATTGCGCAAGGCGCCGACTCTATCATCACAATCGGAGGCATTCAGAGCAACCACTGTCGCGCCACCGCCGTTGCCGCCAAGTATTTAAACCTTGACTGTTTTCTCATCCTCCGCACTTCTGACCTCCTCGTCGATCAAGATCCAGGACTTACTGGCAATCTTCTCGTCGAACGTATGGTTGGAGCTCACGTTCACCTCATCTCCAAACAAGAATATGCCAAAATTGGCAGCGTGACACTCACCAATGTCCTAAAAGAAAAATTGATCAAGGAAGGGAGGAGGCCATATGTTATACCCGTTGGCGGATCAAACTCTTTGGGAACATGGGGTTATATAGAAGCAGTACGGGAAATTGAGCAGCAGATTCAGAAGGGGACAGGCAATGTCAAGTTTGATGATATTGTTGTTGCTTGTGGCAGTGGTGGCACAATTGCTGGTCTGTCACTAGGATCGTCATTGAGTGCATTGAAAGCAAGGGTACATGCATTCTCTGTTTGTGATGACCCAGATTACTTCCACAACTTTGCTCAAGGCTTGCTTGATGGACTCAAGGCTGGCGTTAGCTCAAGAGATATTGTCCACATTCAAAACGCCAAGGGTCTTGGCTATGCAATGAATACATCGGAGGAGCTTAATTTTGTAAAAGAAGTTGCTGCCACTACTGGTGTTGTTCTTGACCCAGTATACAGTGGTAAGGCTGCTTATGCAATGCTGAAAGATATGTCTGAAAATCCAAAGAAGTGGGAAAGGAGAAAGATCCTCTTCATACATACGGGTGGCCTCCTAGGATTGTATGACAAGGTCGATCAGTTGGCTTCTTTTGTTGGGAATTGGCAACGAATGGATGTCAATGAATCTGTTCCTAGGCAGGATGGTATTGGAAAGATGTTCTAGAGAAGGAAAATGAAAAAACCTGACGTTGCCAGCATCTATATTTTGTACTATCTTGCTCTAAATAAATTTTATACTTATATTTAATAGCCATATGCTCACACTGAATCCTGCCTGAAGTTACCATAAGATAGTAAAGTTCCAAAAACTTAAGTGACAAATAAATCAAGTTTTATTTATTTTTATTGTTGGTGCTTGTTTTAGATTAGAATGCCATTAATTTGTCGGTTAA

Coding sequences of Glyma05g33540

Limit To All Plant Sequences

>Glyma05g33540.1   sequence type=CDS   gene model=Glyma05g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCCTTGGGTTTTGAGTTCCTGACGAAGAAGCCTTACAGTCCTCCATCCTGGGCATCCCATCTCCACCCTTTACCTTCCCACTTCTTCTCTCTTGCCCATCTTCCCACTCCAATTCACAGATGGAACCTTCCCAATCTGCCCACCAATACCGAGCTGTGGATCAAGCGAGACGACCTTTCCGGAATGCAGCTGAGTGGTAACAAAGTGAGGAAATTGGAGTTCCTGATGGCCGATGCCATTGCGCAAGGCGCCGACTCTATCATCACAATCGGAGGCATTCAGAGCAACCACTGTCGCGCCACCGCCGTTGCCGCCAAGTATTTAAACCTTGACTGTTTTCTCATCCTCCGCACTTCTGACCTCCTCGTCGATCAAGATCCAGGACTTACTGGCAATCTTCTCGTCGAACGTATGGTTGGAGCTCACGTTCACCTCATCTCCAAACAAGAATATGCCAAAATTGGCAGCGTGACACTCACCAATGTCCTAAAAGAAAAATTGATCAAGGAAGGGAGGAGGCCATATGTTATACCCGTTGGCGGATCAAACTCTTTGGGAACATGGGGTTATATAGAAGCAGTACGGGAAATTGAGCAGCAGATTCAGAAGGGGACAGGCAATGTCAAGTTTGATGATATTGTTGTTGCTTGTGGCAGTGGTGGCACAATTGCTGGTCTGTCACTAGGATCGTCATTGAGTGCATTGAAAGCAAGGGTACATGCATTCTCTGTTTGTGATGACCCAGATTACTTCCACAACTTTGCTCAAGGCTTGCTTGATGGACTCAAGGCTGGCGTTAGCTCAAGAGATATTGTCCACATTCAAAACGCCAAGGGTCTTGGCTATGCAATGAATACATCGGAGGAGCTTAATTTTGTAAAAGAAGTTGCTGCCACTACTGGTGTTGTTCTTGACCCAGTATACAGTGGTAAGGCTGCTTATGCAATGCTGAAAGATATGTCTGAAAATCCAAAGAAGTGGGAAAGGAGAAAGATCCTCTTCATACATACGGGTGGCCTCCTAGGATTGTATGACAAGGTCGATCAGTTGGCTTCTTTTGTTGGGAATTGGCAACGAATGGATGTCAATGAATCTGTTCCTAGGCAGGATGGTATTGGAAAGATGTTCTAG

>Glyma05g33540.2   sequence type=CDS   gene model=Glyma05g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTTTTATGGAACCTTCCCAATCTGCCCACCAATACCGAGCTGTGGATCAAGCGAGACGACCTTTCCGGAATGCAGCTGAGTGGTAACAAAGTGAGGAAATTGGAGTTCCTGATGGCCGATGCCATTGCGCAAGGCGCCGACTCTATCATCACAATCGGAGGCATTCAGAGCAACCACTGTCGCGCCACCGCCGTTGCCGCCAAGTATTTAAACCTTGACTGTTTTCTCATCCTCCGCACTTCTGACCTCCTCGTCGATCAAGATCCAGGACTTACTGGCAATCTTCTCGTCGAACGTATGGTTGGAGCTCACGTTCACCTCATCTCCAAACAAGAATATGCCAAAATTGGCAGCGTGACACTCACCAATGTCCTAAAAGAAAAATTGATCAAGGAAGGGAGGAGGCCATATGTTATACCCGTTGGCGGATCAAACTCTTTGGGAACATGGGGTTATATAGAAGCAGTACGGGAAATTGAGCAGCAGATTCAGAAGGGGACAGGCAATGTCAAGTTTGATGATATTGTTGTTGCTTGTGGCAGTGGTGGCACAATTGCTGGTCTGTCACTAGGATCGTCATTGAGTGCATTGAAAGCAAGGGTACATGCATTCTCTGTTTGTGATGACCCAGATTACTTCCACAACTTTGCTCAAGGCTTGCTTGATGGACTCAAGGCTGGCGTTAGCTCAAGAGATATTGTCCACATTCAAAACGCCAAGGGTCTTGGCTATGCAATGAATACATCGGAGGAGCTTAATTTTGTAAAAGAAGTTGCTGCCACTACTGGTGTTGTTCTTGACCCAGTATACAGTGGTAAGGCTGCTTATGCAATGCTGAAAGATATGTCTGAAAATCCAAAGAAGTGGGAAAGGAGAAAGATCCTCTTCATACATACGGGTGGCCTCCTAGGATTGTATGACAAGGTCGATCAGTTGGCTTCTTTTGTTGGGAATTGGCAACGAATGGATGTCAATGAATCTGTTCCTAGGCAGGATGGTATTGGAAAGATGTTCTAG

Predicted protein sequences of Glyma05g33540

Limit To All Plant Sequences

>Glyma05g33540.1   sequence type=predicted peptide   gene model=Glyma05g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLGFEFLTKKPYSPPSWASHLHPLPSHFFSLAHLPTPIHRWNLPNLPTNTELWIKRDDLSGMQLSGNKVRKLEFLMADAIAQGADSIITIGGIQSNHCRATAVAAKYLNLDCFLILRTSDLLVDQDPGLTGNLLVERMVGAHVHLISKQEYAKIGSVTLTNVLKEKLIKEGRRPYVIPVGGSNSLGTWGYIEAVREIEQQIQKGTGNVKFDDIVVACGSGGTIAGLSLGSSLSALKARVHAFSVCDDPDYFHNFAQGLLDGLKAGVSSRDIVHIQNAKGLGYAMNTSEELNFVKEVAATTGVVLDPVYSGKAAYAMLKDMSENPKKWERRKILFIHTGGLLGLYDKVDQLASFVGNWQRMDVNESVPRQDGIGKMF*

>Glyma05g33540.2   sequence type=predicted peptide   gene model=Glyma05g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVLWNLPNLPTNTELWIKRDDLSGMQLSGNKVRKLEFLMADAIAQGADSIITIGGIQSNHCRATAVAAKYLNLDCFLILRTSDLLVDQDPGLTGNLLVERMVGAHVHLISKQEYAKIGSVTLTNVLKEKLIKEGRRPYVIPVGGSNSLGTWGYIEAVREIEQQIQKGTGNVKFDDIVVACGSGGTIAGLSLGSSLSALKARVHAFSVCDDPDYFHNFAQGLLDGLKAGVSSRDIVHIQNAKGLGYAMNTSEELNFVKEVAATTGVVLDPVYSGKAAYAMLKDMSENPKKWERRKILFIHTGGLLGLYDKVDQLASFVGNWQRMDVNESVPRQDGIGKMF*

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