Glyma05g33510 - SoyBase

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Report for Sequence Feature Glyma05g33510

Feature Type:	gene_model
Chromosome:	Gm05
Start:	38135689
stop:	38147080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17850	AT	Annotation by Michelle Graham. TAIR10: Rhodanese/Cell cycle control phosphatase superfamily protein \| chr1:6146470-6148820 REVERSE LENGTH=448	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1530	KOG	Rhodanese-related sulfurtransferase	JGI		ISS
PTHR18838	Panther	RHODANESE-LIKE DOMAIN-CONTAINING	JGI		ISS
PF00581	PFAM	Rhodanese-like domain	JGI		ISS
UniRef100_F4I933	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhodanese-like domain-containing protein 8, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=STR8_ARATH	SoyBase	E_val: 1.00E-179	ISS
UniRef100_I1K581	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K581_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g33510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33510

Paralog	Evidence	Comments
Glyma08g06220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g248900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g33510

Limit To All Plant Sequences

>Glyma05g33510.2   sequence type=transcript   gene model=Glyma05g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACACACTACAAAATGATTTTTTTCTCATTGTGTAATATATATAACGGAAACTTGATTTTGTTTGGTAAATAATAAACGACAAAAAAGTTGAGGATGGGGAAGACGAAAGAGAGGTGTGTGAAAATCAAAGGCAGGTAAAGAGCAAAGAAAACATGAGTTGGGCTTGGGCCTTAGCTGTTATCCAAGATTTTGTTAACAACTGATTCACAGACTCGGTCACGGTGGCATCGGATAGAGGGGCAAGAAAGGATGAGGTGGTGCAGCCAGGTCTTCTCTGTGTCTGGGTCCGGTGCACATGCACATGCACTCGCTCTCGCTCCTATAGTTACTGCTTCTTTTTCCAACACAAGTCTTGTGTTGCAATTCCAAAAGCCTCTCTTCAAATTCAGCAACTCCTCTTCTCTCGCTCTTACCCATCGTAAGCTGTTACCCTCTGCACTGCCACTAACGCAGCCCTCAAGTTCAAGGGAGGATTTTGATTTCGTGGTCGTCAATTTCTACCACTTTGTATTCATCCAAGACCCACAAGCTGAAGTCGACAAACACCGTTCTTTCTTGCAATTGGAGTATAGCGGGCCATCAAAAGATGCTATGACGTATGTCAACTGGTTAAGAAAGGATAACAGGTTTTCTGACATCTTGGTTCAGATATCTCCATCAGAAAAGGGACATACCTTTCCAACATTGAAGTTGCGTTATAAGCCTTCATTAGTACAGTTTGAAGGTGGTATGTCACATCTTTCATTGCTTGATCCTTCAATGCGGGCAATACCTTTATCACCTTCAGAATGGAGAGATAGATTGGAATCAATCAATAAAACTGATCTTACAGCAAAAGATAACTCAAACAGAAATTACATTCTATTGGATGTGAGAAATGGTTATGAGTGGGATATTGGACATTTTCGTGGGGCTCAGCGACCTAGTGTGGACTGCTTTAGGAACACTTCATTTGGTCTGTCTCGGGAAGAGATCACTGCTTCAGATCCTTTATCAAATGTAGATAAAGAAAAAGCAAACATATTGATGTATTGCACTGGAGGGATTCGCTGTGATGTATATTCTTCAATACTAAGGCAGCAGGGATTTCAGAATTTGTATACTCTGAAGGGAGGTGTTTCTCACTATCTAAAGAATGAAGGCCCTGCCGAATGGGTAGGAAATTTATTTGTATTTGACTCCCGTCTATCTCTCCCTCCTTCTATTTACTATACCGGGGCCACAACTGAAGCAGAGTCAACTCCAGTTTCTGGAGATGATAATTTTGCAAAATGCTACGTATGTAGTTTGGAAGTCAGTGAATTGAGACATAGGAACTGTGCAAATCTTGATTGTAATTTGCTTTTTCTATGCTGCGGACAATGTGCAGAGGATCTAAGAGGTTGTTGTTGTTTGACGTGCACTACTGCTCCTCGGCTTAGACCTGTTTTAAATGGAATGCAGAGATACAAAAAATGGCACTACTATCGGGATATGGATTTTCAAGGGAAAATGAAAATTTCAGCTTGAATGCCCTTGTCAACCAATGGAAAAAGCTAGTTCCTCTCCATTTTTGTTGTTTTCCAGCTGTGCATTGATATCTATATGATCTGTACAAACTGTCAATGAATTTCCATGCATTTAGCTATTTACATATGGATCATGTTAACAACATTGGTTAAGAAATTAAGAAGGAAATTTTTTTATTTGAAATTATATGAGCACATTTTTGCACATCCTAATAAAAAACTTATCTCTTCTATTTTGTT

Coding sequences of Glyma05g33510

Limit To All Plant Sequences

>Glyma05g33510.1   sequence type=CDS   gene model=Glyma05g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTGGTGCAGCCAGGTCTTCTCTGTGTCTGGGTCCGGTGCACATGCACATGCACTCGCTCTCGCTCCTATAGTTACTGCTTCTTTTTCCAACACAAGTCTTGTGTTGCAATTCCAAAAGCCTCTCTTCAAATTCAGCAACTCCTCTTCTCTCGCTCTTACCCATCGTAAGCTGTTACCCTCTGCACTGCCACTAACGCAGCCCTCAAGTTCAAGGGAGGATTTTGATTTCGTGGTCGTCAATTTCTACCACTTTGTATTCATCCAAGACCCACAAGCTGAAGTCGACAAACACCGTTCTTTCTTGCAATTGGAGGGTCTTGACATCAATGGAAGATTATATTTGAATGAACAAGGTATTAATGCGCAGTATAGCGGGCCATCAAAAGATGCTATGACGTATGTCAACTGGTTAAGAAAGGATAACAGGTTTTCTGACATCTTGGTTCAGATATCTCCATCAGAAAAGGGACATACCTTTCCAACATTGAAGTTGCGTTATAAGCCTTCATTAGTACAGTTTGAAGGTGGTATGTCACATCTTTCATTGCTTGATCCTTCAATGCGGGCAATACCTTTATCACCTTCAGAATGGAGAGATAGATTGGAATCAATCAATAAAACTGATCTTACAGCAAAAGATAACTCAAACAGAAATTACATTCTATTGGATGTGAGAAATGGTTATGAGTGGGATATTGGACATTTTCGTGGGGCTCAGCGACCTAGTGTGGACTGCTTTAGGAACACTTCATTTGGTCTGTCTCGGGAAGAGATCACTGCTTCAGATCCTTTATCAAATGTAGATAAAGAAAAAGCAAACATATTGATGTATTGCACTGGAGGGATTCGCTGTGATGTATATTCTTCAATACTAAGGCAGCAGGGATTTCAGAATTTGTATACTCTGAAGGGAGGTGTTTCTCACTATCTAAAGAATGAAGGCCCTGCCGAATGGGTAGGAAATTTATTTGTATTTGACTCCCGTCTATCTCTCCCTCCTTCTATTTACTATACCGGGGCCACAACTGAAGCAGAGTCAACTCCAGTTTCTGGAGATGATAATTTTGCAAAATGCTACGTATGTAGTTTGGAAGTCAGTGAATTGAGACATAGGAACTGTGCAAATCTTGATTGTAATTTGCTTTTTCTATGCTGCGGACAATGTGCAGAGGATCTAAGAGGTTGTTGTTGTTTGACGTGCACTACTGCTCCTCGGCTTAGACCTGTTTTAAATGGAATGCAGAGATACAAAAAATGGCACTACTATCGGGATATGGATTTTCAAGGGAAAATGAAAATTTCAGCTTGA

>Glyma05g33510.2   sequence type=CDS   gene model=Glyma05g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTGGTGCAGCCAGGTCTTCTCTGTGTCTGGGTCCGGTGCACATGCACATGCACTCGCTCTCGCTCCTATAGTTACTGCTTCTTTTTCCAACACAAGTCTTGTGTTGCAATTCCAAAAGCCTCTCTTCAAATTCAGCAACTCCTCTTCTCTCGCTCTTACCCATCGTAAGCTGTTACCCTCTGCACTGCCACTAACGCAGCCCTCAAGTTCAAGGGAGGATTTTGATTTCGTGGTCGTCAATTTCTACCACTTTGTATTCATCCAAGACCCACAAGCTGAAGTCGACAAACACCGTTCTTTCTTGCAATTGGAGTATAGCGGGCCATCAAAAGATGCTATGACGTATGTCAACTGGTTAAGAAAGGATAACAGGTTTTCTGACATCTTGGTTCAGATATCTCCATCAGAAAAGGGACATACCTTTCCAACATTGAAGTTGCGTTATAAGCCTTCATTAGTACAGTTTGAAGGTGGTATGTCACATCTTTCATTGCTTGATCCTTCAATGCGGGCAATACCTTTATCACCTTCAGAATGGAGAGATAGATTGGAATCAATCAATAAAACTGATCTTACAGCAAAAGATAACTCAAACAGAAATTACATTCTATTGGATGTGAGAAATGGTTATGAGTGGGATATTGGACATTTTCGTGGGGCTCAGCGACCTAGTGTGGACTGCTTTAGGAACACTTCATTTGGTCTGTCTCGGGAAGAGATCACTGCTTCAGATCCTTTATCAAATGTAGATAAAGAAAAAGCAAACATATTGATGTATTGCACTGGAGGGATTCGCTGTGATGTATATTCTTCAATACTAAGGCAGCAGGGATTTCAGAATTTGTATACTCTGAAGGGAGGTGTTTCTCACTATCTAAAGAATGAAGGCCCTGCCGAATGGGTAGGAAATTTATTTGTATTTGACTCCCGTCTATCTCTCCCTCCTTCTATTTACTATACCGGGGCCACAACTGAAGCAGAGTCAACTCCAGTTTCTGGAGATGATAATTTTGCAAAATGCTACGTATGTAGTTTGGAAGTCAGTGAATTGAGACATAGGAACTGTGCAAATCTTGATTGTAATTTGCTTTTTCTATGCTGCGGACAATGTGCAGAGGATCTAAGAGGTTGTTGTTGTTTGACGTGCACTACTGCTCCTCGGCTTAGACCTGTTTTAAATGGAATGCAGAGATACAAAAAATGGCACTACTATCGGGATATGGATTTTCAAGGGAAAATGAAAATTTCAGCTTGA

Predicted protein sequences of Glyma05g33510

Limit To All Plant Sequences

>Glyma05g33510.1   sequence type=predicted peptide   gene model=Glyma05g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRWCSQVFSVSGSGAHAHALALAPIVTASFSNTSLVLQFQKPLFKFSNSSSLALTHRKLLPSALPLTQPSSSREDFDFVVVNFYHFVFIQDPQAEVDKHRSFLQLEGLDINGRLYLNEQGINAQYSGPSKDAMTYVNWLRKDNRFSDILVQISPSEKGHTFPTLKLRYKPSLVQFEGGMSHLSLLDPSMRAIPLSPSEWRDRLESINKTDLTAKDNSNRNYILLDVRNGYEWDIGHFRGAQRPSVDCFRNTSFGLSREEITASDPLSNVDKEKANILMYCTGGIRCDVYSSILRQQGFQNLYTLKGGVSHYLKNEGPAEWVGNLFVFDSRLSLPPSIYYTGATTEAESTPVSGDDNFAKCYVCSLEVSELRHRNCANLDCNLLFLCCGQCAEDLRGCCCLTCTTAPRLRPVLNGMQRYKKWHYYRDMDFQGKMKISA*

>Glyma05g33510.2   sequence type=predicted peptide   gene model=Glyma05g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRWCSQVFSVSGSGAHAHALALAPIVTASFSNTSLVLQFQKPLFKFSNSSSLALTHRKLLPSALPLTQPSSSREDFDFVVVNFYHFVFIQDPQAEVDKHRSFLQLEYSGPSKDAMTYVNWLRKDNRFSDILVQISPSEKGHTFPTLKLRYKPSLVQFEGGMSHLSLLDPSMRAIPLSPSEWRDRLESINKTDLTAKDNSNRNYILLDVRNGYEWDIGHFRGAQRPSVDCFRNTSFGLSREEITASDPLSNVDKEKANILMYCTGGIRCDVYSSILRQQGFQNLYTLKGGVSHYLKNEGPAEWVGNLFVFDSRLSLPPSIYYTGATTEAESTPVSGDDNFAKCYVCSLEVSELRHRNCANLDCNLLFLCCGQCAEDLRGCCCLTCTTAPRLRPVLNGMQRYKKWHYYRDMDFQGKMKISA*

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