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Report for Sequence Feature Glyma05g33470

Feature Type:gene_model
Chromosome:Gm05
Start:38106684
stop:38109689
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g33470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39830AT Annotation by Michelle Graham. TAIR10: Cupredoxin superfamily protein | chr4:18479103-18481184 FORWARD LENGTH=582 SoyBaseE_val: 0ISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0046520GO-bp Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_I1K578UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K578_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8S8Z5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein B13-1-1 (Fragment) n=1 Tax=Glycine max RepID=Q8S8Z5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g33470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g33470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.U040600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g33470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g33470
>Glyma05g33470.1   sequence type=CDS   gene model=Glyma05g33470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGCTTCGGTTAAGCATAAGGGCTCTGCAATTGCCAACACTATTGATTCTGTGTTTCTTCCTCATTTTGGGGAATTTTCACAAAGCTGAGGCCAGAATTAGACATCACAAATGGGAGGTAAAGTATGAGTTTAGGTCCCCTGATTGCTTTAAGAAGCTGGTTATTACAATCAATGGCAAAACTCCAGGACCCACCATCCAGGCACAGGAGGGTGATACCATTGTAGTTCAAGTTAACAATAGTTTAGTGACAGAAAACCTTTCCATCCACTGGCACGGGATAAGACAGATTGGAACTCCTTGGTTTGATGGAACAGAAGGGGTAACTCAGTGTCCCATATTGCCTGGAGACACATTTATTTATCAGTTTGTTGTAGACAGGCCTGGTACATATCTTTACCACGCACACTATGGAATGCAAAGAGAAGCGGGGCTATATGGGATGATTCGCGTGGCACCCCGTGACCCTGAACCCTTTGCTTATGACCTTGACCGTAGCATTATCCTCAACGATTGGTACCACAAGAGCACTTATGAACAAGCTGCTGGATTGTCTTCAATTCCCTTTCAATGGGTGGGAGAACCTCAGTCACTTCTGATTCATGGAAAAGGAAGATTCAACTGCTCTAAATCCCCAAGCGTAAGCACTGATGTTTGTGACACATCAAACCCTCAATGCTCTCCCTTTGTACAAACTGTGATCCCGGGAAAAACATACCGACTCAGAATTGCTAGCTTGACTGCTTTATCAGCACTTAGCTTCGAAATTGAGGCCAATGACATGACAGTGGTTGAAGCAGATGGTCACTATGTAGAGCCATTTGAGGTCAAAAACCTCTTCATATACTCAGGTGAGACCTACTCGGTTCTAGTGAAAACCGATCAAGACCCATCAAGGAACTATTGGATCACCTCAAACGTGGTAAGCAGAAACAGAACCACCCCACCCGGGTTGGGCATGTTCAACTACTACCCCAACCACCCTAAACGTTCTCCTCCAACGGTTCCACCTTCTCCTCCTGCTTGGGACGACGTTGAGCCAAGGCTGGCACAAAGCCTCTCCATCAAGGCACGCCAAGGGTACATACTCAAACCCCCGACAACCTCGGACAGAGTCATAGTACTCCTCAACACGCAGAACAACATAAGCGAATACAGGCATTGGTCTGTGAACAATGTCTCTTTCACACTCCCTCATACCCCTTACCTCATTTCCCTCAAAGAGAACATAACCGGTGCGTTTGACCCCACTCCACCCCCTGATGGCTATGACTTTGCAAACTATGACATTTTCAGTGTGGCTAGTAACGCGAATGCAACTTCTAGCAGTGGCATTTATAGGCTCAAGTTCAACACAACGGTGGATATTATACTTCAAAACGCCAACACTATGAACAAAAACAATAGCGAGACACACCCGTGGCACCTTCATGGGCACGATTTTTGGGTTCTTGGGTATGGGAAGGGAAAGTTTGACGTGAACAATGACACCAAAAAGTATAATTTGGAGAACCCCATTATGAAGAACACGGTTCCGGTGCACCCCTTTGGTTGGACCGCATTGAGGTTTAGGACGGATAATCCTGGAGTGTGGGCTTTTCATTGCCATATAGAGTCTCACTTCTATATGGGGATGGGAGTGGTTTTTGAAGAAGGGATAGAGAGGGTTGGGAAGTTGCCTTCATCTATCATGGGTTGTGGTCAAACAAGAGGTTTTCATAGGCCATAA
Predicted protein sequences of Glyma05g33470
>Glyma05g33470.1   sequence type=predicted peptide   gene model=Glyma05g33470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVELRLSIRALQLPTLLILCFFLILGNFHKAEARIRHHKWEVKYEFRSPDCFKKLVITINGKTPGPTIQAQEGDTIVVQVNNSLVTENLSIHWHGIRQIGTPWFDGTEGVTQCPILPGDTFIYQFVVDRPGTYLYHAHYGMQREAGLYGMIRVAPRDPEPFAYDLDRSIILNDWYHKSTYEQAAGLSSIPFQWVGEPQSLLIHGKGRFNCSKSPSVSTDVCDTSNPQCSPFVQTVIPGKTYRLRIASLTALSALSFEIEANDMTVVEADGHYVEPFEVKNLFIYSGETYSVLVKTDQDPSRNYWITSNVVSRNRTTPPGLGMFNYYPNHPKRSPPTVPPSPPAWDDVEPRLAQSLSIKARQGYILKPPTTSDRVIVLLNTQNNISEYRHWSVNNVSFTLPHTPYLISLKENITGAFDPTPPPDGYDFANYDIFSVASNANATSSSGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVLGYGKGKFDVNNDTKKYNLENPIMKNTVPVHPFGWTALRFRTDNPGVWAFHCHIESHFYMGMGVVFEEGIERVGKLPSSIMGCGQTRGFHRP*






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