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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G47570 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:17478919-17483229 FORWARD LENGTH=466 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR16079 | Panther | UBIQUITIN LIGASE PROTEIN CHFR | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7LGH3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase CHFR n=1 Tax=Medicago truncatula RepID=G7LGH3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K556 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K556_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g33220 not represented in the dataset |
Glyma05g33220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g198100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g33220.2 sequence type=transcript gene model=Glyma05g33220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGAAACCGGTTTTGTAAAATGAATTTGATTAATCAATACTACTTTTGTACAACAGTACAATTTTTCTTTTCAATCCAGTTTGAGTGAAAAACGGTTCTGTCTCGGTTTCGAATTCGGTTTCAAACCGGTTCGACCGAACCAGTTTATTTGCACACCCTGGCGATACTGATCCGTCCCATGCACGCTTTTGGACACTATAATGACGATAACCCATTGAACTTCAACTTCTCAGACTCGCAGAAAAGGTCTTTCTTTTGATCAATGGAGGAAAGAGGAGAATGCTCTGCTTCAGCTTCAGCTTCAGCCAATCCCTCAGATGAAATCTGGGCCAAGCTTGTTCTGTCAGATGAGAGATATTCAGATGTGCAGATAAGTTCAGATGAAAAAGTAATATCTTCAGAGATATCAGCTACTTCTAATGACAAACATAGCTGGTGCAAAATAGTAAGGAATCCTGATCTATGTTCAGCCACAATGGAAAACAAGAGTCAAAATACAATACTTGTTGATGGGGTCAAGGTACACAGTGATGATACCATTGTCATTAAGGATGGAAGTCAAATTATCCCAGGTCCTGATAGAGAAGGATTTGTCAGCTACAAATTTCATATAATGTCTGGCCCAGATATCTGCCAGAGGCAGCTAAAGATATGTGTAGATGTCAATCATGCAAAGTGTAGCATTTGCTTAAACTTATGGCATGATGTTGTTACTGTTGCTCCATGCCTTCATAACTTTTGCAATGGTTGCTTCTCAGAGTGGCTAAGGAGATCAAAGGAAAGACACTCAGCCGTTCTTTGTCCTCAATGCAGAGCAGTTGTTCATTTTGCTGGGAAAAACCACTTTTTGCGTACCATTGCTGAGGATATGCTAAGGGCCGATTCTTCACTACAACGCTCACATGACGAAGTTGCACTTTTAGATACTTATGCATTAGTACGATCAAACCTGGTCATTGGATCTGGAAAGAAGAATCGAAAGAGGGCCTACACACCACTGGATGATCAAAGTGATGGCACATACCATCAGTGCCAACAGTGTGTTACTGAAGTTGCTGGGTTTCGTTGCAAATATGACACTGTTCATCTTCAATGTCAAGCATGTGGAGGAATGATGCCTTCCCGCACTGGTTTTGGCATTCCTCAGTATTGTTCAGGATGTGATAGATCATTCTGTGGAGCTTACTGGCATGCTCTAGGGGTAACTGGGAATGGCTCTTACCCTGTCTGCTCCCAGGATACTTTAAGACCTATCTCAGATCACTCTATTTCAAGAATTCCATTGTTAGCACATGAAAAGAATCTCCATGAACAGAATATCACTGATAGTTGCATTAGACAAATGGGGAGGACATTGCCGGATGTGATATCAGAGTGGATAGCAAAGTTTGAAAACAGAGAAATTGATAGAAGGCGGATGATGCTGAATCATGCTGAGATGATTACTGCTCGAACTTTTGGATTGTTACCACAAGTTGGTGTCATTTCTCCTGTATTGGTTTCGCCTCTCTATACCCAAACATCTTCTTCCACCAGATGAATCAGCAAGAGAAGATTGCTGGTATGGATATGCATGTCGGACGCAGCACCGGAGTCAAGAGCATGCTCAGAAAAGGAATCATGTGTGCCGTCCAACAAGAGGCTCAAACATGTGACTATTGTAAACATTTTTCTTTCAAGTAGAATCTGTGTTCTTAATCTTGTCCTTTTTACAAAAACAAAAGTGCTGTGTCAATTGGGTTTTTTTTTTTATTATCTTGTTGGTTGCTACGAATGCCTGGATTCAAAGCAGTTCAAAATTATGAAAACTGATTATTCGTCATTTAAAAAAAATTCTAAACCAAGGATGTATTTGGTATGCTAATAGGACTTAATGGAG
>Glyma05g33220.1 sequence type=CDS gene model=Glyma05g33220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAAGAGGAGAATGCTCTGCTTCAGCTTCAGCTTCAGCCAATCCCTCAGATGAAATCTGGGCCAAGCTTGTTCTGTCAGATGAGAGATATTCAGATGTGCAGATAAGTTCAGATGAAAAAGTAATATCTTCAGAGATATCAGCTACTTCTAATGACAAACATAGCTGGTGCAAAATAGTAAGGAATCCTGATCTATGTTCAGCCACAATGGAAAACAAGAGTCAAAATACAATACTTGTTGATGGGGTCAAGGTACACAGTGATGATACCATTGTCATTAAGGATGGAAGTCAAATTATCCCAGGTCCTGATAGAGAAGGATTTGTCAGCTACAAATTTCATATAATGTCTGGCCCAGATATCTGCCAGAGGCAGCTAAAGATATGTGTAGATGTCAATCATGCAAAGTGTAGCATTTGCTTAAACTTATGGCATGATGTTGTTACTGTTGCTCCATGCCTTCATAACTTTTGCAATGGTTGCTTCTCAGAGTGGCTAAGGAGATCAAAGGAAAGACACTCAGCCGTTCTTTGTCCTCAATGCAGAGCAGTTGTTCATTTTGCTGGGAAAAACCACTTTTTGCGTACCATTGCTGAGGATATGCTAAGGGCCGATTCTTCACTACAACGCTCACATGACGAAGTTGCACTTTTAGATACTTATGCATTAGTACGATCAAACCTGGTCATTGGATCTGGAAAGAAGAATCGAAAGAGGGCCTACACACCACTGGATGATCAAAGTGATGGCACATACCATCAGTGCCAACAGTGTGTTACTGAAGTTGCTGGGTTTCGTTGCAAATATGACACTGTTCATCTTCAATGTCAAGCATGTGGAGGAATGATGCCTTCCCGCACTGGTTTTGGCATTCCTCAGTATTGTTCAGGATGTGATAGATCATTCTGTGGAGCTTACTGGCATGCTCTAGGGGTAACTGGGAATGGCTCTTACCCTGTCTGCTCCCAGGATACTTTAAGACCTATCTCAGATCACTCTATTTCAAGAATTCCATTGTTAGCACATGAAAAGAATCTCCATGAACAGAATATCACTGATAGTTGCATTAGACAAATGGGGAGGACATTGCCGGATGTGATATCAGAGTGGATAGCAAAGTTTGAAAACAGAGAAATTGATAGAAGGCGGATGATGCTGAATCATGCTGAGATGATTACTGCTCGAACTTTTGTATGCCAGGATTGTTACCACAAGTTGGTGTCATTTCTCCTGTATTGGTTTCGCCTCTCTATACCCAAACATCTTCTTCCACCAGATGAATCAGCAAGAGAAGATTGCTGGTATGGATATGCATGTCGGACGCAGCACCGGAGTCAAGAGCATGCTCAGAAAAGGAATCATGTGTGCCGTCCAACAAGAGGCTCAAACATGTGA >Glyma05g33220.2 sequence type=CDS gene model=Glyma05g33220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAAGAGGAGAATGCTCTGCTTCAGCTTCAGCTTCAGCCAATCCCTCAGATGAAATCTGGGCCAAGCTTGTTCTGTCAGATGAGAGATATTCAGATGTGCAGATAAGTTCAGATGAAAAAGTAATATCTTCAGAGATATCAGCTACTTCTAATGACAAACATAGCTGGTGCAAAATAGTAAGGAATCCTGATCTATGTTCAGCCACAATGGAAAACAAGAGTCAAAATACAATACTTGTTGATGGGGTCAAGGTACACAGTGATGATACCATTGTCATTAAGGATGGAAGTCAAATTATCCCAGGTCCTGATAGAGAAGGATTTGTCAGCTACAAATTTCATATAATGTCTGGCCCAGATATCTGCCAGAGGCAGCTAAAGATATGTGTAGATGTCAATCATGCAAAGTGTAGCATTTGCTTAAACTTATGGCATGATGTTGTTACTGTTGCTCCATGCCTTCATAACTTTTGCAATGGTTGCTTCTCAGAGTGGCTAAGGAGATCAAAGGAAAGACACTCAGCCGTTCTTTGTCCTCAATGCAGAGCAGTTGTTCATTTTGCTGGGAAAAACCACTTTTTGCGTACCATTGCTGAGGATATGCTAAGGGCCGATTCTTCACTACAACGCTCACATGACGAAGTTGCACTTTTAGATACTTATGCATTAGTACGATCAAACCTGGTCATTGGATCTGGAAAGAAGAATCGAAAGAGGGCCTACACACCACTGGATGATCAAAGTGATGGCACATACCATCAGTGCCAACAGTGTGTTACTGAAGTTGCTGGGTTTCGTTGCAAATATGACACTGTTCATCTTCAATGTCAAGCATGTGGAGGAATGATGCCTTCCCGCACTGGTTTTGGCATTCCTCAGTATTGTTCAGGATGTGATAGATCATTCTGTGGAGCTTACTGGCATGCTCTAGGGGTAACTGGGAATGGCTCTTACCCTGTCTGCTCCCAGGATACTTTAAGACCTATCTCAGATCACTCTATTTCAAGAATTCCATTGTTAGCACATGAAAAGAATCTCCATGAACAGAATATCACTGATAGTTGCATTAGACAAATGGGGAGGACATTGCCGGATGTGATATCAGAGTGGATAGCAAAGTTTGAAAACAGAGAAATTGATAGAAGGCGGATGATGCTGAATCATGCTGAGATGATTACTGCTCGAACTTTTGGATTGTTACCACAAGTTGGTGTCATTTCTCCTGTATTGGTTTCGCCTCTCTATACCCAAACATCTTCTTCCACCAGATGA
>Glyma05g33220.1 sequence type=predicted peptide gene model=Glyma05g33220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEERGECSASASASANPSDEIWAKLVLSDERYSDVQISSDEKVISSEISATSNDKHSWCKIVRNPDLCSATMENKSQNTILVDGVKVHSDDTIVIKDGSQIIPGPDREGFVSYKFHIMSGPDICQRQLKICVDVNHAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSKERHSAVLCPQCRAVVHFAGKNHFLRTIAEDMLRADSSLQRSHDEVALLDTYALVRSNLVIGSGKKNRKRAYTPLDDQSDGTYHQCQQCVTEVAGFRCKYDTVHLQCQACGGMMPSRTGFGIPQYCSGCDRSFCGAYWHALGVTGNGSYPVCSQDTLRPISDHSISRIPLLAHEKNLHEQNITDSCIRQMGRTLPDVISEWIAKFENREIDRRRMMLNHAEMITARTFVCQDCYHKLVSFLLYWFRLSIPKHLLPPDESAREDCWYGYACRTQHRSQEHAQKRNHVCRPTRGSNM* >Glyma05g33220.2 sequence type=predicted peptide gene model=Glyma05g33220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEERGECSASASASANPSDEIWAKLVLSDERYSDVQISSDEKVISSEISATSNDKHSWCKIVRNPDLCSATMENKSQNTILVDGVKVHSDDTIVIKDGSQIIPGPDREGFVSYKFHIMSGPDICQRQLKICVDVNHAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSKERHSAVLCPQCRAVVHFAGKNHFLRTIAEDMLRADSSLQRSHDEVALLDTYALVRSNLVIGSGKKNRKRAYTPLDDQSDGTYHQCQQCVTEVAGFRCKYDTVHLQCQACGGMMPSRTGFGIPQYCSGCDRSFCGAYWHALGVTGNGSYPVCSQDTLRPISDHSISRIPLLAHEKNLHEQNITDSCIRQMGRTLPDVISEWIAKFENREIDRRRMMLNHAEMITARTFGLLPQVGVISPVLVSPLYTQTSSSTR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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