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Report for Sequence Feature Glyma05g33170

Feature Type:gene_model
Chromosome:Gm05
Start:37897658
stop:37901759
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g33170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10940AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:3656050-3658170 REVERSE LENGTH=363 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0080022GO-bp Annotation by Michelle Graham. GO Biological Process: primary root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0070300GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidic acid binding SoyBaseN/AISS
KOG0583 KOG Serine/threonine protein kinase JGI ISS
PTHR24343Panther SERINE/THREONINE KINASE JGI ISS
PTHR24343:SF58Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_I1K552UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K552_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q43466UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase 3 n=1 Tax=Glycine max RepID=Q43466_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g33170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33170
ParalogEvidenceComments
Glyma08g00770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g197700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g33170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g33170
>Glyma05g33170.1   sequence type=CDS   gene model=Glyma05g33170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAGTATGAGGCTGTCAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGCCAAAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCACAGATCCCTTCGGCACCCCAATATAATTCGCTTCAAGGAGGTGGTTTTGACCCCCACCCATTTAGCCATAGTGATGGAGTATGCGGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGAAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATTTCTGGTGTACATTACTGTCATGCCATGCAAATATGTCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCCCGTCTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCATTGCTTCATTCTCGACCAAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCCAGGAGGGAGTATGATGGCAAGTTGGCTGATGTATGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCTTACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCCCAAGACTGCAGACACCTCCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATATCTCTTAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGAGAGCTAACAGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAATCCAAGCTTTTCTGTTCAAAGTGTGGAGGAGATCATGAAAATTGTGGGAGAGGCAAGGGACCCTCCTCCAGTATCTAGGCTTGTCAAAGGTTTTGGCTGGGAGGGCAAAGAAGATGAAGGGGAAGAAGACGTGGAGGAAGAGGAGGATGAAGAAGACGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTTCAAATCAGTTAA
Predicted protein sequences of Glyma05g33170
>Glyma05g33170.1   sequence type=predicted peptide   gene model=Glyma05g33170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRLVKGFGWEGKEDEGEEDVEEEEDEEDEYDKRVKEVHASGEFQIS*






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