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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30390 | AT | Annotation by Michelle Graham. TAIR10: ferrochelatase 2 | chr2:12951242-12953985 REVERSE LENGTH=512 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019760 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004325 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferrochelatase activity | SoyBase | N/A | ISS |
| KOG1321 | KOG | Protoheme ferro-lyase (ferrochelatase) | JGI | ISS | |
| PTHR11108 | Panther | FERROCHELATASE | JGI | ISS | |
| PF00762 | PFAM | Ferrochelatase | JGI | ISS | |
| UniRef100_G7LGG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ferrochelatase n=1 Tax=Medicago truncatula RepID=G7LGG4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A3FF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A3FF related cluster n=1 Tax=unknown RepID=UPI000233A3FF | SoyBase | E_val: 0 | ISS |
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Glyma05g33160 not represented in the dataset |
Glyma05g33160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g00760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g197600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g33160.2 sequence type=transcript gene model=Glyma05g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGAGATGAGATGATAATAACAAAAAAAAAAAAAAGAAAGAAGGAAGTCTGGAGGTGTGGATTTTTCTCAATCTCACCCGTCACTCTCAACCTCAAGGGTCCCTCTCTGCATTCAGATTTCAGATGCAAATGGCCTTTGAACATTTATAACATTCTCCACCTTTGTATAAAAACCACTGTAATCAGAAAAAATATGTAATAAAATAAACTAAAAAGGAGATTTTCATGGTCTTCATTCACAGTGCAGCCTCTTCTTAGGAGTAGCTCCTTCTCTTCCAGTTTTGTGGGAATTTGTAACAGAAAGACGAGCAAGCGGTTAAAGTATGAATTCTCCAATTCATGCCCCTTCACCTCCTTCTTCTTCTTCTTCTTGCTCCTATAACCGTCCTCCTCCATGTCTCGCTCATGCTTCTCGTAATTTCAAGTTTCCTCTGCTGTTGCCACAGGCAATCCGTACCTCTCAAAAGATGTATCGCTGCTCTGGAGGCCATGTGGAGGGTTCTACTAACACTAATCCCTTGAAAAATTATGTAGTGGGCAGAAGTACTTCAGGATGGTTTGAAACCCAACCCTTGGTTTCTGAGCAATTACTCAACAGGCGCTTGTTGCCAGTGGAAGCTTTAGTAACTCCCACAGTTCAAGATTTTTCTGATACACCTCTTATTGGTGATGATAAGATTGGAGTGTTATTGTTGAACCTCGGAGGTCCAGAGACTTTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTCGCTGACCCAGATATTATACGACTTCCAAGGTTATTTAGCTTTCTTCAAAAGCCATTGGCCCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGATCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGAGTTGAGGAAATCTCTTTGGTCAAAGAATGTCCCAGCCAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAACAGGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTAGAAGAGGCTGGTGATCCATACAAGGCAGAGATGGAGGAATGTGTTGATTTGATCATGGAAGAACTTGAAAAGAGAAAGATAACTAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCTTATACAGATGAGACAATAATTGAACTTGGGGAAAAGGGAGTAAAAAGTCTGCTGGCTGTACCAATTAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTCTAAACTCTGGTATAGAAAAGTGGGGTCGTGTTCCTGCTCTAGGAACTGAACCCACTTTCATTTCAGATTTAGCAGATGCTGTAATTGAGAGTCTCCCTTATGTTGGTGCAATGGCGGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCACTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCGCAACGTAGGGAGTTGCCGCCACCAGTAATTGTGTGGGAATGGGGATGGACCAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAAGGGTTTCTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGAGTGAGTCCTCACCTACCCTCTATGGCAGTGGAATTTAGTTTTGCTTGTATATGTATACCATTAGCATCATATGGCCCTTGAAGGCGTGCGTTCAGGAGTTCTCAAATGTAGTTTAGACACATAATTTGTGGATGGAAATGAGAGAAAAGTAATGTATAGTGATTTGGTTTGTATACTACGCAGAGTACCTCTTGTACGTATCTAAAGCAATTTTACTTGGGTTCCATGATCCATGATACCTACTCGGTGGTTGTAGCTTAAAAGCAGTTTTTGACATCACAATTTCCTTGTGAACTCTTAAGACCTTCTCT
>Glyma05g33160.1 sequence type=CDS gene model=Glyma05g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTCTCCAATTCATGCCCCTTCACCTCCTTCTTCTTCTTCTTCTTGCTCCTATAACCGTCCTCCTCCATGTCTCGCTCATGCTTCTCGTAATTTCAAGTTTCCTCTGCTGTTGCCACAGGCAATCCGTACCTCTCAAAAGATGTATCGCTGCTCTGGAGGCCATGTGGAGGGTTCTACTAACACTAATCCCTTGAAAAATTATGTAGTGGGCAGAAGTACTTCAGGATGGTTTGAAACCCAACCCTTGGTTTCTGAGCAATTACTCAACAGGCGCTTGTTGCCAGTGGAAGCTTTAGTAACTCCCACAGTTCAAGATTTTTCTGATACACCTCTTATTGGTGATGATAAGATTGGAGTGTTATTGTTGAACCTCGGAGGTCCAGAGACTTTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTCGCTGACCCAGATATTATACGACTTCCAAGGTTATTTAGCTTTCTTCAAAAGCCATTGGCCCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGATCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGAGTTGAGGAAATCTCTTTGGTCAAAGAATGTCCCAGCCAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAACAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCAACCAGTGGTTCAAGTCTTCGTCTCTTGGAGAGTATATTCAGAGATGATGAGTATCTAGTCAACATGCAGCACACAGTAATTCCTTCATGGTACCAGCGTGAAGGATACATTAAGGCCATGACAAATTTAATTGAAAAGGAGCTAAGAGGTTTTGACTGCCCTGAGGAGGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTAGAAGAGGCTGGTGATCCATACAAGGCAGAGATGGAGGAATGTGTTGATTTGATCATGGAAGAACTTGAAAAGAGAAAGATAACTAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCTTATACAGATGAGACAATAATTGAACTTGGGGAAAAGGGAGTAAAAAGTCTGCTGGCTGTACCAATTAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTCTAAACTCTGGTATAGAAAAGTGGGGTCGTGTTCCTGCTCTAGGAACTGAACCCACTTTCATTTCAGATTTAGCAGATGCTGTAATTGAGAGTCTCCCTTATGTTGGTGCAATGGCGGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCACTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCGCAACGTAGGGAGTTGCCGCCACCAGTAATTGTGTGGGAATGGGGATGGACCAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAAGGGTTTCTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGA >Glyma05g33160.2 sequence type=CDS gene model=Glyma05g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTCTCCAATTCATGCCCCTTCACCTCCTTCTTCTTCTTCTTCTTGCTCCTATAACCGTCCTCCTCCATGTCTCGCTCATGCTTCTCGTAATTTCAAGTTTCCTCTGCTGTTGCCACAGGCAATCCGTACCTCTCAAAAGATGTATCGCTGCTCTGGAGGCCATGTGGAGGGTTCTACTAACACTAATCCCTTGAAAAATTATGTAGTGGGCAGAAGTACTTCAGGATGGTTTGAAACCCAACCCTTGGTTTCTGAGCAATTACTCAACAGGCGCTTGTTGCCAGTGGAAGCTTTAGTAACTCCCACAGTTCAAGATTTTTCTGATACACCTCTTATTGGTGATGATAAGATTGGAGTGTTATTGTTGAACCTCGGAGGTCCAGAGACTTTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTCGCTGACCCAGATATTATACGACTTCCAAGGTTATTTAGCTTTCTTCAAAAGCCATTGGCCCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGATCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGAGTTGAGGAAATCTCTTTGGTCAAAGAATGTCCCAGCCAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAACAGGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTAGAAGAGGCTGGTGATCCATACAAGGCAGAGATGGAGGAATGTGTTGATTTGATCATGGAAGAACTTGAAAAGAGAAAGATAACTAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCTTATACAGATGAGACAATAATTGAACTTGGGGAAAAGGGAGTAAAAAGTCTGCTGGCTGTACCAATTAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTCTAAACTCTGGTATAGAAAAGTGGGGTCGTGTTCCTGCTCTAGGAACTGAACCCACTTTCATTTCAGATTTAGCAGATGCTGTAATTGAGAGTCTCCCTTATGTTGGTGCAATGGCGGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCACTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCGCAACGTAGGGAGTTGCCGCCACCAGTAATTGTGTGGGAATGGGGATGGACCAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAAGGGTTTCTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGA
>Glyma05g33160.1 sequence type=predicted peptide gene model=Glyma05g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSPIHAPSPPSSSSSCSYNRPPPCLAHASRNFKFPLLLPQAIRTSQKMYRCSGGHVEGSTNTNPLKNYVVGRSTSGWFETQPLVSEQLLNRRLLPVEALVTPTVQDFSDTPLIGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWSKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRDDEYLVNMQHTVIPSWYQREGYIKAMTNLIEKELRGFDCPEEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGEKGVKSLLAVPISFVSEHIETLEEIDVEYKELALNSGIEKWGRVPALGTEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVIVWEWGWTKSAETWNGRAAMLAVLLLLFLEVTTGEGFLHQWGILPLFR* >Glyma05g33160.2 sequence type=predicted peptide gene model=Glyma05g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSPIHAPSPPSSSSSCSYNRPPPCLAHASRNFKFPLLLPQAIRTSQKMYRCSGGHVEGSTNTNPLKNYVVGRSTSGWFETQPLVSEQLLNRRLLPVEALVTPTVQDFSDTPLIGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWSKNVPAKVYVGMRYWHPFTEEAIEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGEKGVKSLLAVPISFVSEHIETLEEIDVEYKELALNSGIEKWGRVPALGTEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVIVWEWGWTKSAETWNGRAAMLAVLLLLFLEVTTGEGFLHQWGILPLFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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