Glyma05g33140 - SoyBase

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Report for Sequence Feature Glyma05g33140

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37872419
stop:	37879084
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g33140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63620	AT	Annotation by Michelle Graham. TAIR10: GroES-like zinc-binding alcohol dehydrogenase family protein \| chr5:25466380-25468296 REVERSE LENGTH=427	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG0022	KOG	Alcohol dehydrogenase, class III	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF294	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_G7LFT6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7LFT6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K548	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K548_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g33140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g33140 not represented in the dataset	Glyma05g33140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g33140

Paralog	Evidence	Comments
Glyma08g00740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g33140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g197400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g33140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g33140

Limit To All Plant Sequences

>Glyma05g33140.2   sequence type=transcript   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGGATCTCTATCTCATCTCATAGTTGATTTAGTATTTAATTCCTATGTAGTTGTTTGTACTTTGTTGTAATCATCAACTCACTCAGTTCCCGTAGGTTGTCGTGATTCATCACAGCATATTGTCTCTGAAATTCAGAAATGACATCTGCAATGCCAAGGTGTTGGTGGTGATGCATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTTTTTTTTCGAAACAGTGGAAAACCAGCATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGCGTTGTGCCAGCAAATGGAGTGTCTGTATTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAGGATGGGGGGAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCCGAAAGATACAAGTTATTGGCTCATATGGAGGCAGAGCGAGGCAAGATCTTCCTAAGTTAATTAGACTGGCAGAAACAGGAATCTTCAATCTTGGCCATGCTGTTTCTAGAACATACACCTTTGACGAGGCAGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATCGAGATAATATAGCTCTATATTCCCAGCAATGCTTTTCTGCAGCAGCAATAGCTCTGCTTCTCACACCCTACAAGATATACATGCTTTGGAGTTGCAAGGTGTTGGTGCCCTGAGAACACAAATAGATAGATGTCCTCTGATGTGTCATTGCAGGGACATGTTCAAATGAAAACTGTTTTTCTTTTTGTGCATTGCTTTGCTTCTAAGTTCTAACTCATGTAATCAAATAGGTACACCAAGGTGAAGAATAATAGTCTCTGAATGCTCATCATTGGCATGCCATAAAACTGATGATGAAAAAGCAGGAAAATAACAGAAAAGCTAGACATGCTCCAAGAAAGTAAATTTAAAAAAAATGTTTCCAAAATGAATTTTTGTACAAATTATGGGTGAATGTGGCTTTTACTTTTTAACTTTACGTACTTAGAGCAGCCAAATTCTTGAAGATCCTTTGTTAAATAATCATTGCATCTCCAACAATGTCGGAAATAGGATCCTAATTCACATTT

>Glyma05g33140.3   sequence type=transcript   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGCAAGTTGTATTTAAGGTTGAGTTGAATACTAAGTTCCCGTAGGTTGTCGTGATTCATCACAGCATATTGTCTCTGAAATTCAGAAATGACATCTGCAATGGTTCGTAGGAACATCGCCACCCACTACTCCAAGTTTGCTTCTTCTTGGTCTTTGTTGTCTCGCCATTCCTCAATCCTCAACCCTCTCTCTGTGTCTTTTTCTTCATTTCATAGCCAAGGTGTTGGTGGTGATGCATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTTTTTTTTCGAAACAGTGGAAAACCAGCATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGCGTTGTGCCAGCAAATGGAGTGTCTGTATTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAGGATGGGGGGAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCCGAAAGATACAAGTTATTGGCTCATATGGAGGCAGAGCGAGGCAAGATCTTCCTAAGTTAATTAGACTGGCAGAAACAGGAATCTTCAATCTTGGCCATGCTGTTTCTAGAACATACACCTTTGACGAGGCAGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATCGAGATAATATAGCTCTATATTCCCAGCAATGCTTTTCTGCAGCAGCAATAGCTCTGCTTCTCACACCCTACAAGATATACATGCTTTGGAGTTGCAAGGTGTTGGTGCCCTGAGAACACAAATAGATAGATGTCCTCTGATGTGTCATTGCAGGGACATGTTCAAATGAAAACTGTTTTTCTTTTTGTGCATTGCTTTGCTTCTAAGTTCTAACTCATGTAATCAAATAGGTACACCAAGGTGAAGAATAATAGTCTCTGAATGCTCATCATTGGCATGCCATAAAACTGATGATGAAAAAGCAGGAAAATAACAGAAAAGCTAGACATGCTCCAAGAAAGTAAATTTAAAAAAAATGTTTCCAAAATGAATTTTTGTACAAATTATGGGTGAATGTGGCTTTTACTTTTTAACTTTACGTACTTAGAGCAGCCAAATTCTTGAAGATCCTTTGTTAAATAATCATTGCATCTCCAACAATGTCGGAAATAGGATCCTAATTCACATTT

Coding sequences of Glyma05g33140

Limit To All Plant Sequences

>Glyma05g33140.1   sequence type=CDS   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCTGCAATGGTTCGTAGGAACATCGCCACCCACTACTCCAAGTTTGCTTCTTCTTGGTCTTTGTTGTCTCGCCATTCCTCAATCCTCAACCCTCTCTCTGTGTCTTTTTCTTCATTTCATAGCCAAGGTGTTGGTGGTGATGCATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTTTTTTTTCGAAACAGTGGAAAACCAGCATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGCGTTGTGCCAGCAAATGGAGTGTCTGTATTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAGGATGGGGGGAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCCGAAAGATACAAGTTATTGGCTCATATGGAGGCAGAGCGAGGCAAGATCTTCCTAAGTTAATTAGACTGGCAGAAACAGGAATCTTCAATCTTGGCCATGCTGTTTCTAGAACATACACCTTTGACGAGGCAGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATCGAGATAATATAG

>Glyma05g33140.2   sequence type=CDS   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTTTTTTTTCGAAACAGTGGAAAACCAGCATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGCGTTGTGCCAGCAAATGGAGTGTCTGTATTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAGGATGGGGGGAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCCGAAAGATACAAGTTATTGGCTCATATGGAGGCAGAGCGAGGCAAGATCTTCCTAAGTTAATTAGACTGGCAGAAACAGGAATCTTCAATCTTGGCCATGCTGTTTCTAGAACATACACCTTTGACGAGGCAGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATCGAGATAATATAG

>Glyma05g33140.3   sequence type=CDS   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCTGCAATGGTTCGTAGGAACATCGCCACCCACTACTCCAAGTTTGCTTCTTCTTGGTCTTTGTTGTCTCGCCATTCCTCAATCCTCAACCCTCTCTCTGTGTCTTTTTCTTCATTTCATAGCCAAGGTGTTGGTGGTGATGCATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTTTTTTTTCGAAACAGTGGAAAACCAGCATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGCGTTGTGCCAGCAAATGGAGTGTCTGTATTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAGGATGGGGGGAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCCGAAAGATACAAGTTATTGGCTCATATGGAGGCAGAGCGAGGCAAGATCTTCCTAAGTTAATTAGACTGGCAGAAACAGGAATCTTCAATCTTGGCCATGCTGTTTCTAGAACATACACCTTTGACGAGGCAGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATCGAGATAATATAG

Predicted protein sequences of Glyma05g33140

Limit To All Plant Sequences

>Glyma05g33140.1   sequence type=predicted peptide   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSAMVRRNIATHYSKFASSWSLLSRHSSILNPLSVSFSSFHSQGVGGDALPSYMRGAVYWEPNKPLTIEEFNMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFSSPCVVGHEITGEVVEHGALTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAFMYSMGGLAEYCVVPANGVSVLPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKILEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFDEAGKAFQDLNEGKIVGRAVIEII*

>Glyma05g33140.2   sequence type=predicted peptide   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGAVYWEPNKPLTIEEFNMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFSSPCVVGHEITGEVVEHGALTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAFMYSMGGLAEYCVVPANGVSVLPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKILEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFDEAGKAFQDLNEGKIVGRAVIEII*

>Glyma05g33140.3   sequence type=predicted peptide   gene model=Glyma05g33140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSAMVRRNIATHYSKFASSWSLLSRHSSILNPLSVSFSSFHSQGVGGDALPSYMRGAVYWEPNKPLTIEEFNMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFSSPCVVGHEITGEVVEHGALTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAFMYSMGGLAEYCVVPANGVSVLPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKILEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFDEAGKAFQDLNEGKIVGRAVIEII*

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