Glyma05g32940 - SoyBase

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Report for Sequence Feature Glyma05g32940

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37719382
stop:	37723271
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08330	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr4:5255384-5256525 REVERSE LENGTH=164	SoyBase	E_val: 6.00E-22	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI000233A841	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A841 related cluster n=1 Tax=unknown RepID=UPI000233A841	SoyBase	E_val: 2.00E-86	ISS

Expression Patterns of Glyma05g32940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32940

Paralog	Evidence	Comments
Glyma08g00570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g195800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32940

Limit To All Plant Sequences

>Glyma05g32940.2   sequence type=transcript   gene model=Glyma05g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATCTCTAACACTCTATATATCATTCATAGTTGTAGTCTTGTAGATGTGTGTTCCGTCACTATATGAAAAAGGCTAATTGCCAAGGATATTTACCCATGGATTCAAATTGGTCGTAGTTGGTAATATTTTAACTTTACCTATGGATATGGAAAGAGATATAAGGTTGATCCAGTGATTGAGAAAAAGAGAAGGAAGTGGGGAAGGTTGGTCCCCCAGCTAACATTTTTAACAAAACTAATAAACAAATATTTATTGATAACAAAACCTATGGATATTTACCTACGGATTATGAATTCAAGCTGTAGTTCGTGTGGTTATGAGCTGAACTTGAACTCCAGCAACCGCAACACTTGTTCTCTGATTGACTCGAAGTCCATAAAGAGAGGCATCATCTCCTTCTTCTCTGTGGATGAGAGCAGGTTCACTCAGATCCAACAACTTCACTGGCCTTCTTGGATACCCTTTTTCAACTCCAAGCGCCAAAGAACCAAGCTCCTTTGCCGCAGCTGTGGGAACCATCTTGGCTATGCTTACACTTCGCCCTCTCAATCCTGGGATGGCATCTCTGATGATTCCAGAATCTATGATATCAAACTAACCTCTTTGTTACCTTCCTTCTGTGAGGAACCAAGTCAAAGGTTAGAGTGCATCTCTTCAACTCTGGTGTTCTAATTCTGAAAGGGATAGAAAGATTCATCAGTTTCTTGTTTGTTTGAATGTGAATTAATGTATTCTACTTTTTGATCATTATGAGGATATTTTCTCCACAGTTTTTTTTATTCTGTTTTGTGCTTAGTTGATCATACAACTCTTGTGTACTCTGTTTAGCTTTATTGTGTATTGTACAATCTCCTAGTTATTTACAATTTTGAACTTGGAACAATCTCAACGGATAGACTCCTCAAAGTGCAGCAGTAATGAACTTTCAAATCTTCACCTTTTGATTAATTTATGCAAATAATCTTCATTTCCCGTTATTTTCTCTAAAGGCCTTGAATTGATTAGTCTCTCCTATAATCACTTTGAATTGGGCATCATGGTATATTAACTTAATATGCTGGTAATTACGACATTGCAGCAGAATACATTTACTCTTGCTGTAGAACTTTGTCTATAAGATTTTAATGAAGGAACAAAACAAGAAAGATTTCATTCATTCTATGCCACTAAAAATTTTAGTCCCCCAGTGGATGTTACCATTGACAAGTATCTTCCCTCAAGTCAATTCAGACACAAGGACATGAAAAAGAAATCAAGAATCGTGTGTTACAATAAGCATAAAATTATATTTAAACCAATATATATACATATGTCCAATTCATTATACTCTTTTTACTCAACCCAATTTATGTCCAACTGTTTTAGTTCGGTAAGCCAATTTTGTGGATCTTGAGAAACAGTGGGTCTAGATGGTGTCTTGATCTCACTATCTACATCAGGTGATGCTACATCATCATCAACTTTCTTATCCTTGGCAAGGTTGTCTTGTCTGCTTCGTTGCCGCCTCACCTTGAGGGACAGAAGGCGAGAAACCTGACGAAGTCCACCCCACTTTTCCAATGCCCGTGCTATATCAAAGCGCCCTGTGGGAAAATTCCATCATGTACTAACTTCAAATTGGGAGTGGGATAAAGTTACAGCCATCAGTTGTGATGTTACAACTTTCATCCATCTTTCTTTGCTAGACTTGAAAGTAAGCAAACCTATGGTTTGTTGCTGTAAACAACAAAATCAAAATTGAGGGGAATATCTTAACCAACCTGCACGTTCAAATGACCTTCTGCTAGGCATAAATGAAGGGTCCATTCCCCAGCTCCTTTGAAATCTACTTATCTGCATGAAGATGTAAACAATGTTATGCATAGATGCTTAACATTTATCCTTCATCATGTCATTGTTATTTAACTTTTTAGATTGTCATTCTGGTTAAGAGAATAAGTGGTAACTAGATTGGAACTTTTGCACGCTCACCTCATAATGCAAATTTTCAAGATTGTCCCAGTAACCCTTTGGTTTGCGGTGTTTGTAAGCCAGAGAGAGGTTCATTATAGTTGCAATCTTTCTGAATCCACCCATGCGATTTATAGCCTTCTCAATATCCACTCTTCCGTGCAAACGAAGTTGCTTCCTCATTGGCATAAATCCTTCTTGTCCATGTTCTGCAATGAATTTCAGGAGTTCAGATTTTAGTACTTCAATATCCCTTTGTAAACCTGGAACTCTTGGTCGTTGTTGAGATGAGCTTTGAGCATTGCAATCAAACAAGTCTTCTGCTGAACAATAGCTGTCATCATCTTCAAAGCCAGATGGAACAGTTTGTTGCCCCAAATCTGTATTCTGCTTACATGCTTCGAACATATTTGATGCTGTCCTATTCTCAATATAGTCTCTTATTGCACACAAATTTGATGGGAGATCTTCATATATGACCTGAAATAATATTGTCAAAAGAAATAACATTTCAGTTCTGG

Coding sequences of Glyma05g32940

Limit To All Plant Sequences

>Glyma05g32940.1   sequence type=CDS   gene model=Glyma05g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTTACCTACGGATTATGAATTCAAGCTGTAGTTCGTGTGGTTATGAGCTGAACTTGAACTCCAGCAACCGCAACACTTGTTCTCTGATTGACTCGAAGTCCATAAAGAGAGGCATCATCTCCTTCTTCTCTGTGGATGAGAGCAGGTTCACTCAGATCCAACAACTTCACTGGCCTTCTTGGATACCCTTTTTCAACTCCAAGCGCCAAAGAACCAAGCTCCTTTGCCGCAGCTGTGGGAACCATCTTGGCTATGCTTACACTTCGCCCTCTCAATCCTGGGATGGCATCTCTGATGATTCCAGAATCTATGATATCAAACTAACCTCTTTGTTACCTTCCTTCTGTGAGGAACCAAGTCAAAGATAA

>Glyma05g32940.2   sequence type=CDS   gene model=Glyma05g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTTACCTACGGATTATGAATTCAAGCTGTAGTTCGTGTGGTTATGAGCTGAACTTGAACTCCAGCAACCGCAACACTTGTTCTCTGATTGACTCGAAGTCCATAAAGAGAGGCATCATCTCCTTCTTCTCTGTGGATGAGAGCAGGTTCACTCAGATCCAACAACTTCACTGGCCTTCTTGGATACCCTTTTTCAACTCCAAGCGCCAAAGAACCAAGCTCCTTTGCCGCAGCTGTGGGAACCATCTTGGCTATGCTTACACTTCGCCCTCTCAATCCTGGGATGGCATCTCTGATGATTCCAGAATCTATGATATCAAACTAACCTCTTTGTTACCTTCCTTCTGTGAGGAACCAAGTCAAAGGTTAGAGTGCATCTCTTCAACTCTGGTGTTCTAA

Predicted protein sequences of Glyma05g32940

Limit To All Plant Sequences

>Glyma05g32940.1   sequence type=predicted peptide   gene model=Glyma05g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIYLRIMNSSCSSCGYELNLNSSNRNTCSLIDSKSIKRGIISFFSVDESRFTQIQQLHWPSWIPFFNSKRQRTKLLCRSCGNHLGYAYTSPSQSWDGISDDSRIYDIKLTSLLPSFCEEPSQR*

>Glyma05g32940.2   sequence type=predicted peptide   gene model=Glyma05g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIYLRIMNSSCSSCGYELNLNSSNRNTCSLIDSKSIKRGIISFFSVDESRFTQIQQLHWPSWIPFFNSKRQRTKLLCRSCGNHLGYAYTSPSQSWDGISDDSRIYDIKLTSLLPSFCEEPSQRLECISSTLVF*

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