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Report for Sequence Feature Glyma05g32911

Feature Type:gene_model
Chromosome:Gm05
Start:37692236
stop:37699556
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64440AT Annotation by Michelle Graham. TAIR10: fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607 SoyBaseE_val: 3.00E-170ISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0070291GO-bp Annotation by Michelle Graham. GO Biological Process: N-acylethanolamine metabolic process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004040GO-mf Annotation by Michelle Graham. GO Molecular Function: amidase activity SoyBaseN/AISS
GO:0016884GO-mf Annotation by Michelle Graham. GO Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor SoyBaseN/AISS
GO:0047412GO-mf Annotation by Michelle Graham. GO Molecular Function: N-(long-chain-acyl)ethanolamine deacylase activity SoyBaseN/AISS
KOG1211 KOG Amidases JGI ISS
PTHR11895Panther AMIDASE JGI ISS
PTHR11895:SF7Panther GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A JGI ISS
PF01425PFAM Amidase JGI ISS
UniRef100_G7LFP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Medicago truncatula RepID=G7LFP2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A840UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A840 related cluster n=1 Tax=unknown RepID=UPI000233A840 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g32911 not represented in the dataset

Glyma05g32911 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g00535 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g195500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g32911.1   sequence type=CDS   gene model=Glyma05g32911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGTTCAGAAGTAAGGGTGTGATTTATAGGCCAGTGAAGGATGTTAACTTAGGTCCTGATAGCACTGAATTCTATCTCCAAGCCAATGTCAAAGCTCCCCGCATGACTGGAATCCTGGTCAAGATTTTCACTTGGTTCTTGGAGTCTCCAATACTTGGACCCTTGCTATTGTATATATTGAAGGGAAACAATCTTATTCATAAACTTATTACAAATGCAGACTTAGAAGAGTCACCCCTCTATGTTCCCTCACATCATTTTGAAGACCACAAAGAACAAGAAGTCAAATGCTTGGATTCTGCTTTAACTCCAGAAGAACAAGTTCAACTTGCAATAGAGTGCTTACCTACATCTTCAGAAAAAGCACATAATGGAACAAACTCTTCGTTCTCTCGTTGGACCATAATGGATTATTCCAGAGCCTACAGCTCGGGAGAAATAACACCACTCATGGTTGCTGAACGATTTATTGCCGCTGTTAATGAATCTTCAAAACCTCCACTCCGAATGGGATTTTTTATTCACTACAGTGCTGATGATATACTAAGACAAGCAAATGAATCAACTCTTCGGTATAAAAAAGGGGAACCTATCTCTGTGCTAGATGGAGTTCCTGTTGCTATCAAGGATGAAATGGATTGTTTGCCATATCCAACTACAGGAGGTACAAAGTGGTTGCACAGAGAAAGGCCTTGTACAGATGATGCTTGCTGTGTTAAGCGTCTGAGATTATGTGGCGCCATACTTGTTGGGAAGACTAATATGCATGAACTTGGGGTTGGAATTAGTGGTATCAATCCACATTATGGGGCTGCTAGAAACCCATATGATACCAATAAGATTTCAGGAGGTTCTTCTAGTGGATCTGCTACTGTGGTGTCTGCAGGATTGTGCCCTGTTGCCCTTGGTGTTGACGGGGGAGGTTCTGTGAGGGTGCCTGCATCTCTTTGTGGTGTAGTTGGTCTAAAACCAACTTTTGGCCGTGTACCTCATTCCGGAGTCCTTCCTCTAAACTGGACAGTTGGGATGGTTGGAATACTAGCCGGCACTGTTGAGGATGCATTGATCACTTATGCAGCCATTAGTGGAGAAATTTCATCCCATCAGCCCTCTAATATGCTTACCAAGATAAATCTTCCACTGCTGCCCTTGACGAAGTCCATATGTGACATCAAGTTGGCAAAATATGGGAAGTGGTTTGATGATTGCAGTGATGATGTCATATTATGCTGCTCCCGTGCCTTGAGGAAGCTTCAGGATCATTATGGTTGGAAGACAATTGATGTCACTATCCCAGACATAGAAGCAATGCGCCTAGCACATTACTTAACAATTGGATCAGAGTGTTCCACTTGGTTTGATTCTTTTGGAGAAAAATATTTTGCAGAATTTGGATGGGACGCAAGGGTTGCACTTAACATCTATGGTGCTTTCAGTGGCAAGGAGTACATTAAAGCTCAGAAACTGAGGAATCGACAGTTGCAGTTTCACATGAAAATATTTGCTGAGGCAGATGTCATTGTGTCACCAACAACAGGTGTGACTGCATACTCGATTCAAGATGATGCACTAAAGACTGGTGAACTTGACTACGTAAATGGAGCTGCACTTGTTCGGTATTCCATATCAGGAAACTTCCTAGGACTTCCTGCTGTGACTGTACCGGTTGGATACGATAAATTGGGTTTGCCTATTGGGCTTCAGTTTATAGGAAGGCCTTGGGCTGAAGCAACACTGATCCACTTGGCATTTGCAACGCAGGCCATATGCTTAGAATACAGAAAGCCAAAGATATTTTATGATCTGTTAAGAAAAAATTAA

>Glyma05g32911.1   sequence type=predicted peptide   gene model=Glyma05g32911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLFRSKGVIYRPVKDVNLGPDSTEFYLQANVKAPRMTGILVKIFTWFLESPILGPLLLYILKGNNLIHKLITNADLEESPLYVPSHHFEDHKEQEVKCLDSALTPEEQVQLAIECLPTSSEKAHNGTNSSFSRWTIMDYSRAYSSGEITPLMVAERFIAAVNESSKPPLRMGFFIHYSADDILRQANESTLRYKKGEPISVLDGVPVAIKDEMDCLPYPTTGGTKWLHRERPCTDDACCVKRLRLCGAILVGKTNMHELGVGISGINPHYGAARNPYDTNKISGGSSSGSATVVSAGLCPVALGVDGGGSVRVPASLCGVVGLKPTFGRVPHSGVLPLNWTVGMVGILAGTVEDALITYAAISGEISSHQPSNMLTKINLPLLPLTKSICDIKLAKYGKWFDDCSDDVILCCSRALRKLQDHYGWKTIDVTIPDIEAMRLAHYLTIGSECSTWFDSFGEKYFAEFGWDARVALNIYGAFSGKEYIKAQKLRNRQLQFHMKIFAEADVIVSPTTGVTAYSIQDDALKTGELDYVNGAALVRYSISGNFLGLPAVTVPVGYDKLGLPIGLQFIGRPWAEATLIHLAFATQAICLEYRKPKIFYDLLRKN*







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