Glyma05g32890 - SoyBase

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Report for Sequence Feature Glyma05g32890

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37665919
stop:	37677711
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63610	AT	Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase E;1 \| chr5:25463645-25465057 REVERSE LENGTH=470	SoyBase	E_val: 0	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0666	KOG	Cyclin C-dependent kinase CDK8	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF83	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J2M4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-dependent kinase E-1 n=1 Tax=Medicago truncatula RepID=G7J2M4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K524	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K524_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g32890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32890

Paralog	Evidence	Comments
Glyma08g00510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g195300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32890

Limit To All Plant Sequences

>Glyma05g32890.4   sequence type=transcript   gene model=Glyma05g32890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCCTAAAAAATGAATAAATACTTGCTCTAACAAAAACCCTTTCAATTTTCAGACGCTGCTGCCTATCCCCTTGCGATCGAACAGAACAGAAGAGAGATGGGGGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCTTAGGAAAAATCGGCGAAGGCACTTACGGCCTCGTCTTCCTCGCCCGAACCAAATCCCCCGTTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTGCTGAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTCAACGTACACATCAACCACGCCGACATGTCTCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGACAAACTCAACCATTCCATTAATCAGTACACTGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGTGATTTGAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTCTGAAGCCGTTATCTGACAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTATGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAGCCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGTAAGCGTTTAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGAAATGCACTTGTACCCTGCCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCAGTGGACACTACAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAAACGGTAAATGCAGTTTCTGGTAGCATGCCTGGTCCTCATGGGTCAAATAGATCTGTGCCTCGGCCAATGAATGTTGTTGGAATGCAAAGACTGCCCCCTCAAGCAATGGCAGCTTATAATCTCTCATCTCAGGCAGCCATGGGAGATGGAATGAATCCTGGGGATATCTCAAAGCATCGAGGTGTTCCACAGGCCCATCAGCCACAACAGTTGAGAAGGAAGGAGCAAATGGGGATGCCGGGATACCCTGCACAACAGAAGTCAAGACGATTATAAGGTTTCTGCTGGAAGAGAGACTAAGTGAAGATAGATTTGGGGTCAATACTTCAGTACCTGAACTCATGCAGGACATTTCTGGACAGTGTTTGCCTTCAATACTTGCAAGCCTCACTTTATTGCAATCAAAGATTGGGTGCATTCTTCTCTGGAATTTTGATGCTAAAATGCCAAATGTATGCTGGAACACCAATGAAGCCATAAAAGGGAATAAACGTATGAAAGGGTTAAGCTACTGTAAGCACATGTATATCATGATTATAACAATGCAATTCTATTGTATTTCTTAGCTTTTGGGCAAGATCAATGTCAGTAAACCAAATGTTGATCATCCATTAGGTTTTCATAATGGAACTTTTCTTGATTAAATCTATAACATGCTACTTTGTATTTGTAGAATATTTTGCCTCACATGATTGAAGATAGTTCAAATATCACTTGCCTTTGGTATTTCCGTTTTGAATTTTTCTGTGATCACTGGAATCACAGACTTTTCACTCCCAAGGAGATTATTGAAGCTTTCTGTGAGTATGATGTAAACTTTGTTCGGAGACGTAGTAGTATGAAGATATGAAAAGCAGCAATTGGGAGAATTATCTGATCATACTTTTGGAACTCTAATGTTAAGCCAGTGTTAAGTATTTTGATATCATTGGCAAGTGGCTCT

Coding sequences of Glyma05g32890

Limit To All Plant Sequences

>Glyma05g32890.3   sequence type=CDS   gene model=Glyma05g32890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCTTAGGAAAAATCGGCGAAGGCACTTACGGCCTCGTCTTCCTCGCCCGAACCAAATCCCCCGTTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTGCTGAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTCAACGTACACATCAACCACGCCGACATGTCTCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGACAAACTCAACCATTCCATTAATCAGTACACTGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGTGATTTGAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTCTGAAGCCGTTATCTGACAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTATGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAGCCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGTAAGCGTTTAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGAAATGCACTTGTACCCTGCCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCAGTGGACACTACAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAAACGGTAAATGCAGTTTCTGGTAGCATGCCTGGTCCTCATGGGTCAAATAGATCTGTGCCTCGGCCAATGAATGTTGTTGGAATGCAAAGACTGCCCCCTCAAGCAATGGCAGCTTATAATCTCTCATCTCAGGCAGCCATGGGAGATGGAATGAATCCTGGGGATATCTCAAAGCATCGAGGTGTTCCACAGGCCCATCAGCCACAACAGTTGAGAAGGAAGGAGCAAATGGGGATGCCGGGATACCCTGCACAACAGAAGTCAAGACGATTATAA

>Glyma05g32890.4   sequence type=CDS   gene model=Glyma05g32890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCTTAGGAAAAATCGGCGAAGGCACTTACGGCCTCGTCTTCCTCGCCCGAACCAAATCCCCCGTTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTGCTGAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTCAACGTACACATCAACCACGCCGACATGTCTCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGACAAACTCAACCATTCCATTAATCAGTACACTGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGTGATTTGAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTCTGAAGCCGTTATCTGACAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTATGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAGCCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGTAAGCGTTTAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGAAATGCACTTGTACCCTGCCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCAGTGGACACTACAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAAACGGTAAATGCAGTTTCTGGTAGCATGCCTGGTCCTCATGGGTCAAATAGATCTGTGCCTCGGCCAATGAATGTTGTTGGAATGCAAAGACTGCCCCCTCAAGCAATGGCAGCTTATAATCTCTCATCTCAGGCAGCCATGGGAGATGGAATGAATCCTGGGGATATCTCAAAGCATCGAGGTGTTCCACAGGCCCATCAGCCACAACAGTTGAGAAGGAAGGAGCAAATGGGGATGCCGGGATACCCTGCACAACAGAAGTCAAGACGATTATAA

Predicted protein sequences of Glyma05g32890

Limit To All Plant Sequences

>Glyma05g32890.3   sequence type=predicted peptide   gene model=Glyma05g32890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKSPVGTPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAMGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRLTAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTTTDLEGTTNLPPSQTVNAVSGSMPGPHGSNRSVPRPMNVVGMQRLPPQAMAAYNLSSQAAMGDGMNPGDISKHRGVPQAHQPQQLRRKEQMGMPGYPAQQKSRRL*

>Glyma05g32890.4   sequence type=predicted peptide   gene model=Glyma05g32890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKSPVGTPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAMGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRLTAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTTTDLEGTTNLPPSQTVNAVSGSMPGPHGSNRSVPRPMNVVGMQRLPPQAMAAYNLSSQAAMGDGMNPGDISKHRGVPQAHQPQQLRRKEQMGMPGYPAQQKSRRL*

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