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Report for Sequence Feature Glyma05g32790

Feature Type:gene_model
Chromosome:Gm05
Start:37601771
stop:37608481
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63860AT Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein | chr5:25554821-25558587 REVERSE LENGTH=440 SoyBaseE_val: 0ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009649GO-bp Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0000785GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromatin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003682GO-mf Annotation by Michelle Graham. GO Molecular Function: chromatin binding SoyBaseN/AISS
GO:0005085GO-mf Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity SoyBaseN/AISS
KOG1427 KOG Uncharacterized conserved protein, contains RCC1 domain JGI ISS
PTHR22870Panther REGULATOR OF CHROMOSOME CONDENSATION JGI ISS
PTHR22870:SF27Panther UVB-RESISTANCE PROTEIN UVR8 JGI ISS
PF00415PFAM Regulator of chromosome condensation (RCC1) repeat JGI ISS
UniRef100_G8A1N5UniRef Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G8A1N5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K517UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K517_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
UVR8 UVB-RESISTANCE 8

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g00440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g194400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g32790.1   sequence type=CDS   gene model=Glyma05g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATGAAGTGATGAGTGAAGTGGCTGCTCCACCTCGTCGTGTTCTTCTTGTATCGGCTGGTGCCAGCCACAGTGTGGCACTTCTGAGTGGAAATGTTGTTTGTTCGTGGGGACGAGGAGAGGATGGACAGTTAGGCCATGGTGACACTGATGATCGACTATTTCCTACAAAACTGAGTGCATTGGATGGCCAAGACATAATATGTGTTACTTGTGGAGCTGATCATACTATGGCACGTTCTGAGTCTGGCAGGGATGTATATAGTTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGA

>Glyma05g32790.1   sequence type=predicted peptide   gene model=Glyma05g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDEVMSEVAAPPRRVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLSALDGQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRNVPTIIEAFSVDGSSGQHIESSKPYPSSGKSSSSISERYAIVPDETASGSQPTTSEEGNRHDTSVPESDVN*







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