Report for Sequence Feature Glyma05g32790
Feature Type: gene_model
Chromosome: Gm05
Start: 37601771
stop: 37608481
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g32790
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G63860 AT
Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein | chr5:25554821-25558587 REVERSE LENGTH=440
SoyBase E_val: 0 ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0009411 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV
SoyBase N/A ISS
GO:0009649 GO-bp
Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0000785 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chromatin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003682 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chromatin binding
SoyBase N/A ISS
GO:0005085 GO-mf
Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity
SoyBase N/A ISS
KOG1427
KOG
Uncharacterized conserved protein, contains RCC1 domain
JGI ISS
PTHR22870 Panther
REGULATOR OF CHROMOSOME CONDENSATION
JGI ISS
PTHR22870:SF27 Panther
UVB-RESISTANCE PROTEIN UVR8
JGI ISS
PF00415 PFAM
Regulator of chromosome condensation (RCC1) repeat
JGI ISS
UniRef100_G8A1N5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G8A1N5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K517 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K517_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma05g32790
Locus Gene Symbol Protein Name
UVR8 UVB-RESISTANCE 8
Expression Patterns of Glyma05g32790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g32790
Paralog Evidence Comments
Glyma08g00440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g32790 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g194400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g32790
Coding sequences of Glyma05g32790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g32790.1 sequence type=CDS gene model=Glyma05g32790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGATGAAGTGATGAGTGAAGTGGCTGCTCCACCTCGTCGTGTTCTTCTTGTATCGGCTGGTGCCAGCCACAGTGTGGCACTTCTGAGTGGAAATGTTGTTTGTTCGTGGGGACGAGGAGAGGATGGACAGTTAGGCCATGGTGACACTGATGATCGACTATTTCCTACAAAACTGAGTGCATTGGATGGCCAAGACATAATATGTGTTACTTGTGGAGCTGATCATACTATGGCACGTTCTGAGTCTGGCAGGGATGTATATAGTTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGA
Predicted protein sequences of Glyma05g32790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g32790.1 sequence type=predicted peptide gene model=Glyma05g32790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDEVMSEVAAPPRRVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLSALDGQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRNVPTIIEAFSVDGSSGQHIESSKPYPSSGKSSSSISERYAIVPDETASGSQPTTSEEGNRHDTSVPESDVN*